PDB entry 1w39

View 1w39 on RCSB PDB site
Description: Crystal structure of an artificial top component of turnip yellow mosaic virus
Class: virus
Keywords: artificial top component, capsid protein, tymv, virus, virus/viral protein, icosahedral virus
Deposited on 2004-07-14, released 2004-08-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 3.75 Å
R-factor: N/A
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: turnip yellow mosaic virus empty capsid
    Species: Turnip yellow mosaic virus [TaxId:12154]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w39a_
  • Chain 'B':
    Compound: turnip yellow mosaic virus empty capsid
    Species: Turnip yellow mosaic virus [TaxId:12154]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w39b_
  • Chain 'C':
    Compound: turnip yellow mosaic virus empty capsid
    Species: Turnip yellow mosaic virus [TaxId:12154]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w39c_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1w39A (A:)
meidkelapqdrtvtvatvlpavpgpspltikqpfqsevlfagtkdaeasltianidsvs
tlttfyrhasleslwvtihptlqaptfpttvgvcwvpaqspvtpaqitktyggqifcigg
aiqtlsplivkcplemmqprvkdsiqyldspkllisitaqptappastciitvsgtlsmh
splitdtst

    Sequence, based on observed residues (ATOM records): (download) 
    >1w39A (A:)
qdrtvtspltikqpfqsevlfagtkdaeasltianidsvstlttfyrhasleslwvtihp
tlqaptfpttvgvcwvpaqspvtpaqitktyggqifciggaiqtlsplivkcplemmqpr
vkdsiqyldspkllisitaqptappastciitvsgtlsmhsplitdtst

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w39B (B:)
meidkelapqdrtvtvatvlpavpgpspltikqpfqsevlfagtkdaeasltianidsvs
tlttfyrhasleslwvtihptlqaptfpttvgvcwvpaqspvtpaqitktyggqifcigg
aiqtlsplivkcplemmqprvkdsiqyldspkllisitaqptappastciitvsgtlsmh
splitdtst

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w39C (C:)
meidkelapqdrtvtvatvlpavpgpspltikqpfqsevlfagtkdaeasltianidsvs
tlttfyrhasleslwvtihptlqaptfpttvgvcwvpaqspvtpaqitktyggqifcigg
aiqtlsplivkcplemmqprvkdsiqyldspkllisitaqptappastciitvsgtlsmh
splitdtst