PDB entry 1w2b

View 1w2b on RCSB PDB site
Description: Trigger Factor ribosome binding domain in complex with 50S
Class: ribosome
Keywords: ribosome, ribosome_associated factors, chaperone, nascent chain, cotranslational folding, RNA-binding, ribosomal protein
Deposited on 2004-07-01, released 2004-09-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-07-12, with a file datestamp of 2017-07-07.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: 23s rRNA
    Species: Haloarcula marismortui [TaxId:2238]
  • Chain '1':
    Compound: 50S ribosomal protein L39e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2b1_
  • Chain '2':
    Compound: 50s ribosomal protein l44e la, hla, ribosomal protein l44e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2b2_
  • Chain '5':
    Compound: Trigger Factor
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • GB AAA62791
    Domains in SCOPe 2.08: d1w2b5_
  • Chain '9':
    Compound: 5s rRNA
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
  • Chain 'A':
    Compound: 50S ribosomal protein L2P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2ba_
  • Chain 'B':
    Compound: 50S ribosomal protein L3P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20279 (311-336)
      • conflict (309)
    Domains in SCOPe 2.08: d1w2bb_
  • Chain 'C':
    Compound: 50S ribosomal protein L4P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bc_
  • Chain 'D':
    Compound: 50s ribosomal protein l5p hmal5, hl13, ribosomal protein l5
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bd_
  • Chain 'E':
    Compound: 50S ribosomal protein L6P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2be_
  • Chain 'F':
    Compound: 50S ribosomal protein L7Ae
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bf_
  • Chain 'G':
    Compound: 50S ribosomal protein L10e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bg_
  • Chain 'H':
    Compound: 50S ribosomal protein L10e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bh_
  • Chain 'I':
    Compound: 50S ribosomal protein L13P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bi_
  • Chain 'J':
    Compound: 50S ribosomal protein L14P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bj_
  • Chain 'K':
    Compound: 50S ribosomal protein L15P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bk_
  • Chain 'L':
    Compound: 50S ribosomal protein L15e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bl_
  • Chain 'M':
    Compound: 50S ribosomal protein L18P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bm_
  • Chain 'N':
    Compound: 50S ribosomal protein L18e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bn_
  • Chain 'O':
    Compound: 50S ribosomal protein L19e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bo_
  • Chain 'P':
    Compound: 50S ribosomal protein L21e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bp_
  • Chain 'Q':
    Compound: 50s ribosomal protein l22p hmal22, hl23, ribosomal protein l22
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 50S ribosomal protein L23P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2br_
  • Chain 'S':
    Compound: ribosomal protein l24
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bs_
  • Chain 'T':
    Compound: 50S ribosomal protein L24P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bt_
  • Chain 'U':
    Compound: 50S ribosomal protein L24e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bu_
  • Chain 'V':
    Compound: 50S ribosomal protein L30P
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bv_
  • Chain 'W':
    Compound: 50S ribosomal protein L31e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bw_
  • Chain 'X':
    Compound: 50S ribosomal protein L32e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bx_
  • Chain 'Y':
    Compound: 50S ribosomal protein L37Ae
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2by_
  • Chain 'Z':
    Compound: ribosomal protein l37e
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1w2bz_
  • Heterogens: MG, K, NA, CL, CD, HOH

PDB Chain Sequences:

  • Chain '0':
    No sequence available.

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1w2b1 (1:)
gkkskatkkrlakldnqnsrvpawvmlktdevqrnhkrrhwrrndtde

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2b1 (1:)
gkkskatkkrlakldnqnsrvpawvmlktdernhkrrhwrrndtde

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2b2 (2:)
mqmprrfntycphcnehqehevekvrsgrqtgmkwidrqrernsgigndgkfskvpggdk
ptkktdlkyrcgecgkahlregwragrlefqe

  • Chain '5':
    Sequence, based on SEQRES records: (download) 
    >1w2b5 (5:)
mqvsvettqglgrrvtitiaadsietavkselvnvakkvridgfrkgkvpmnivaqryga
svrqdvlgdlmsrnfidaiikekinpagaptyvpgeyklgedftysvefevypevelqgl
eaievekpivevtdadvdgmldtl

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2b5 (5:)
etavkselvnvakkvridgfrkgkvpmnivaqryg

  • Chain '9':
    No sequence available.

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1w2bA (A:)
grriqgqrrgrgtstfrapshrykadlehrkvedgdviagtvvdiehdparsapvaavef
edgdrrlilapegvgvgdelqvgvdaeiapgntlplaeipegvpvcnvesspgdggkfar
asgvnaqllthdrnvavvklpsgemkrldpqcratigvvggggrtdkpfvkagnkhhkmk
argtkwpnvrgvamnavdhpfggggrqhpgkpksisrnappgrkvgdiaskrtgrggne

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bA (A:)
grriqgqrrgrgtstfrapshrykadlehrkvedgdviagtvvdiehdparsapvaavef
edgdrrlilapegvgvgdelqvgvdaeiapgntlplaeipegvpvcnvesspgdggkfar
asgvnaqllthdrnvavvklpsgemkrldpqcratigvvggggrtdkpfvkagnkhhkmk
argtkwpnvrgvamnavdhpfggggrqhpgkpksisrnappgrkvgdiaskrtgrggn

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bB (B:)
pqpsrprkgslgfgprkrstsetprfnswpsddgqpgvqgfagykagmthvvlvndepns
pregmeetvpvtvietppmravalrayedtpygqrpltevwtdefhseldrtldvpedhd
pdaaeeqirdaheagdlgdlrlithtvpdavpsvpkkkpdvmetrvgggsvsdrldhald
ivedggehamndifrageyadvagvtkgkgtqgpvkrwgvqkrkgkharqgwrrrignlg
pwnpsrvrstvpqqgqtgyhqrtelnkrlidigegdeptvdggfvnygevdgpytlvkgs
vpgpdkrlvrfrpavrpndqprldpevryvsnesnqg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bC (C:)
mqatiydldgntdgevdlpdvfetpvrsdligkavraaqanrkqdygsdeyaglrtpaes
fgsgrgqahvpkldgrarrvpqavkgrsahppktekdrsldlndkerqlavrsalaatad
adlvadrghefdrdevpvvvsddfedlvktqevvsllealdvhadidradetkikagqgs
argrkyrrpasilfvtsdepstaarnlagadvatasevntedlapggapgrltvftesal
aevaer

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1w2bD (D:)
ssesesggdfhemrepriekvvvhmgighggrdlanaedilgeitgqmpvrtkakrtvge
fdiregdpigakvtlrdemaeeflqtalplaelatsqfddtgnfsfgveehtefpsqeyd
psigiygldvtvnlvrpgyrvakrdkasrsiptkhrlnpadavafiestydvevse

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bD (D:)
fhemrepriekvvvhmgighanaedilgeitgqmpvrtkakrtvgefdiregdpigakvt
lrdemaeeflqtalplaelatsqfddtgnfsfgldvtvnlvrpgyrvakrdkasrsiptk
hrlnpadavafiestydvevs

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1w2bE (E:)
prveleipedvdaeqdhlditvegdngsvtrrlwypdidvsvdgdtvviesdednaktms
tigtfqshienmfhgvtegweygmevfyshfpmqvnvegdevvienflgekaprrttihg
dtdveidgeeltvsgpdieavgqtaadieqltrindkdvrvfqdgvyitrkpnrgda

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bE (E:)
prveleipedvdaeqdhlditvegdngsvtrrlwypdidvsvdgdtvviesdednaktms
tigtfqshienmfhgvtegweygmevfyshfpmqvnvegdevvienflgekaprrttihg
dtdveidgeeltvsgpdieavgqtaadieqltrindkdvrvfqdgvyitrkpn

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bF (F:)
pvyvdfdvpadleddalealevardtgavkkgtnettksiergsaelvfvaedvqpeeiv
mhipeladekgvpfifveqqddlghaaglevgsaaaavtdagaaatvleeiadkveelr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1w2bG (G:)
msaeserktetipewkqeevdaivemiesyesvgvvniagipsrqlqdmrrdlhgtaelr
vsrntlleralddvddgledlngyitgqvgligtddnpfslfqeleasktpapigageva
pndivipegdtgvdpgpfvgelqsvgadariqegsiqvlsdstvldtgeevsqelsnvln
elgiepkevgldlravfadgvlfepeeleldideyrsdiqaaagrafnlsvnadyptatt
aptmlqsdrgnakslalqaaiedpevvpdlvskadaqvralasqiddeealpeelqgvea
dvateeptddqdddtaseddadaddaaeeadddddddedagdalgamf

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bG (G:)
ipewkqeevdaivemiesrntlleralddv

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1w2bH (H:)
kpgamyrnsskpaytrreyisgipgkkiaqfdmgnngagptypaqvelvvekpvqirhna
leaarvaanryvqnsgaaanykfrirkfpfhvirenkaaaaaaaaaaadgmrapfgkpvg
taarvhganhifiawvnpdpnveeawrrakmkvtptinidsspagna

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bH (H:)
kpgamyrnsskpaytrreyisgipgkkiaqfdmgnngagptypaqvelvvekpvqirhna
leaarvaanryvqnsgaaanykfrirkfpfhvirenkdgmrapfgkpvgtaarvhganhi
fiawvnpdpnveeawrrakmkvtptinidsspagna

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1w2bI (I:)
msvaefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekr
vdigndngyfypkrpdgifkrtirgmlphkkqrgreafesvrvylgnpydedgevldgts
ldrlsnikfvtlgeisetlganktw

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bI (I:)
aefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekrvdi
gndngyfypkrpdgifkrtirgmlphkkqrgreafesvrvylgnpydedgevldgtsldr
lsnikfvtlgeisetlganktw

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bJ (J:)
mealgadvtqglekgslitcadntgarelkvisvhgysgtknrhpkaglgdkitvsvtkg
tpemrrqvleavvvrqrkpirrpdgtrvkfednaavivdenedprgtelkgpiarevaqr
fgsvasaatmiv

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1w2bK (K:)
tskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqee
aatidvreidenvtllaaddvaevedggfrvdvrdvveeaddadyvkvlgagqvrheltl
iaddfsegarekvegaggsveltdlgeerqaeaeetedadadee

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bK (K:)
tskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqee
aatidvreidenvtllaaddvaefrvdvrdvveeaddadyvkvlgagqvrheltliaddf
segarekvegaggsveltdlgeerqa

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bL (L:)
arsaysyireawkrpkegqiaelmwhrmqewrnepavvrierptrldrarslgykakqgi
ivvrvairkgssrrtrfnkgrrskrmmvnritrkkniqriaeeranrkfpnlrvlnsysv
gedgrhkwhevilidpdhpaiksddqlswisrtrhrlrtfrgltsagrrcrglrgqgkgs
ekvrpslrvngaka

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bM (M:)
atgprykvpmrrrreartdyhqrlrllksgkprlvarksnkhvraqlvtlgpngddtlas
ahssdlaeygweaptgnmpsayltgllaglraqeagveeavldiglnsptpgskvfaiqe
gaidagldiphnddvladwqrtrgahiaeydeqleeplysgdfdaadlpehfdelretll
dgdiel

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bN (N:)
sktnprlssliadlksaarssggavwgdvaerlekprrthaevnlgrieryaqedetvvv
pgkvlgsgvlqkdvtvaavdfsgtaetkidqvgeavsleqaiennpegshvrvir

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1w2bO (O:)
tdlsaqkrlaadvldvgknrvwfnperqgdiadaitredvrelvdegaiqakdkkgnsrg
rarerqkkrakghqkgagsrkgkagarqnskedwesriraqrtklrelrdegtlsssqyr
dlydkagggefdsvadleryidanhgda

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bO (O:)
tdlsaqkrlaadvldvgknrvwfnperqgdiadaitredvrelvdegaiqakdkkgnsrg
rarerqkkrakghqkgagsrkgkagarqnskedwesriraqrtklrelrdegtlsssqyr
dlydkagggefdsvadleryidan

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bP (P:)
pssngplegtrgklknkprdrgtsppqraveefddgekvhlkidpsvpngrfhprfdgqt
gtvegkqgdaykvdivdggkektiivtaahlrrqe

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bR (R:)
swdvikhphvtekamndmdfqnklqfavddraskgevadaveeqydvtveqvntqntmdg
ekkavvrlsedddaqevasrigvf

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bS (S:)
skqpdkqrksqrraplherhkqvratlsadlreeygqrnvrvnagdtvevlrgdfageeg
evinvdldkavihvedvtlektdgeevprpldtsnvrvtdldledekrearleseddsa

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1w2bT (T:)
prtrecdycgtdiepgtgtmfvhkdgatthfcsskcennadlgrearnlewtdtargeag
eaedea

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bT (T:)
recdycgtdiepgtgtmfvhkdgatthfcsskcennadlgrearnlewtdtarg

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >1w2bU (U:)
tvlhvqeirdmtpaereaelddlktellnaravqaaggapenpgrikelrkaiariktiq
geegdlqene

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bU (U:)
tvlhvqeirdmtpaereaelddlktellnaravqaaggapenpgrikelrkaiariktiq
geegdl

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bV (V:)
mhalvqlrgevnmhtdiqdtlemlnihhvnhctlvpetdayrgmvakvndfvafgepsqe
tletvlatraeplegdadvddewvaehtdyddisglafallseettlreqglsptlrlhp
prgghdgvkhpvkeggqlgkhdtegiddlleamr

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >1w2bW (W:)
sasdfeervvtiplrdaraepnhkradkamilirehlakhfsvdedavrldpsineaawa
rgrantpskirvraarfeeegeaiveaetae

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bW (W:)
ervvtiplrdaraepnhkradkamilirehlakhfsvdedavrldpsineaawargrant
pskirvraarfeeegeaiveaet

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >1w2bX (X:)
adneedveaeeeyteltdisgvgpskaeslreagfesvedvrgadqsaladvsgignala
arikadvggleveseteaeveeeggeeapdedvetelqargltektpdlsdedarlltqr
hrvgkpqfnrqdhhkkkrvstswrkprgqlskqrrgikgkgdtveagfrsptavrgkhps
gfeevrvhnvddlegvdgdteavriaskvgarkrerieeeaedagirvlnptyvevevse

    Sequence, based on observed residues (ATOM records): (download) 
    >1w2bX (X:)
telqargltektpdlsdedarlltqrhrvgkpqfnrqdhhkkkrvstswrkprgqlskqr
rgikgkgdtveagfrsptavrgkhpsgfeevrvhnvddlegvdgdteavriaskvgarkr
erieeeaedagirvlnptyveve

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bY (Y:)
rtgrfgpryglkirvrvadveikhkkkhkcpvcgfkklkragtgiwmcghcgykiaggcy
qpetvagkavmka

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w2bZ (Z:)
tgagtpsqgkknttthtkcrrcgeksyhtkkkvcsscgfgksakrrdyewqskage