PDB entry 1vya
View 1vya on RCSB PDB site
Description: Identification and characterization of the first plant G-quadruplex binding protein encoded by the Zea mays L. nucleoside diphosphate1 gene, ZmNDPK1
Class: transferase
Keywords: G4-binding protein, NDPK, DNA metabolism, G-quadruplex, TRANSFERASE
Deposited on
2014-08-14, released
2015-04-08
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-11-27, with a file datestamp of
2019-11-22.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyaa_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyab_ - Chain 'C':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyac_ - Chain 'D':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyad_ - Chain 'E':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyae_ - Chain 'F':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyaf_ - Chain 'G':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyag_ - Chain 'H':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyah_ - Chain 'I':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyai_ - Chain 'J':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyaj_ - Chain 'K':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyak_ - Chain 'L':
Compound: Nucleoside diphosphate kinase
Species: Zea mays [TaxId:4577]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vyal_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaA (A:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaB (B:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaC (C:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaD (D:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaE (E:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaF (F:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaG (G:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaH (H:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaI (I:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaJ (J:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaK (K:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1vyaL (L:)
mestfimikpdgvqrgligeiisrfekkgfylkalklvnversfaekhyadlaskpffqg
lvdyiisgpvvamvwegksvvttgrkiigatnplasepgtirgdfavdigrnvihgsdsi
esankeialwfpegladwqssqhpwiyek