PDB entry 1vtl
View 1vtl on RCSB PDB site
Description: co-crystal structure of tbp recognizing the minor groove of a tata element
Class: transcription/DNA
Keywords: PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA complex
Deposited on
1993-12-17, released
2011-07-13
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-07-13, with a file datestamp of
2011-07-08.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.202
AEROSPACI score: 0.36
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA (5'-d(*gp*cp*tp*ap*tp*ap*ap*ap*ap*gp*gp*gp*cp*a)-3')
- Chain 'B':
Compound: DNA (5'-d(*tp*gp*cp*cp*cp*tp*tp*tp*tp*ap*tp*ap*gp*c)-3')
- Chain 'C':
Compound: DNA (5'-d(*gp*cp*tp*ap*tp*ap*ap*ap*ap*gp*gp*gp*cp*a)-3')
- Chain 'D':
Compound: DNA (5'-d(*tp*gp*cp*cp*cp*tp*tp*tp*tp*ap*tp*ap*gp*c)-3')
- Chain 'E':
Compound: tata binding protein (tbp)
Species: Arabidopsis thaliana [TaxId:3702]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1vtle1, d1vtle2 - Chain 'F':
Compound: tata binding protein (tbp)
Species: Arabidopsis thaliana [TaxId:3702]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1vtlf1, d1vtlf2
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1vtlE (E:)
dlskhpsgivptlqnivstvnldckldlkaialqarnaeynpkrfaavimrirepkttal
ifasgkmvctgaksedfskmaarkyarivqklgfpakfkdfkiqnivgscdvkfpirleg
layshaafssyepelfpgliyrmkvpkivllifvsgkivitgakmrdetykafeniypvl
sefrki
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1vtlF (F:)
dlskhpsgivptlqnivstvnldckldlkaialqarnaeynpkrfaavimrirepkttal
ifasgkmvctgaksedfskmaarkyarivqklgfpakfkdfkiqnivgscdvkfpirleg
layshaafssyepelfpgliyrmkvpkivllifvsgkivitgakmrdetykafeniypvl
sefrki