PDB entry 1vsd

View 1vsd on RCSB PDB site
Description: asv integrase core domain with mg(II) cofactor and hepes ligand, high mg concentration form
Class: endoribonuclease
Keywords: hydrolase, endonuclease, endoribonuclease
Deposited on 1995-11-29, released 1996-04-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-12.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.15
AEROSPACI score: 0.6 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: integrase
    Species: Rous sarcoma virus (strain Schmidt-Ruppin) [TaxId:11889]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03354 (Start-149)
      • conflict (51)
      • conflict (116)
    Domains in SCOPe 2.08: d1vsda_
  • Heterogens: MG, EPE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vsdA (A:)
plreglgplqiwqtdftleprmaprswlavtvdtassaivvtqhgrvtsvaaqhhwatai
avlgrpkaiktdngscftskstrewlarwgiahttgipgnsqgqamveranrllkdkirv
laegdgfmkriptskqgellakamyalnhfnl

    Sequence, based on observed residues (ATOM records): (download) 
    >1vsdA (A:)
glgplqiwqtdftleprmaprswlavtvdtassaivvtqhgrvtsvaaqhhwataiavlg
rpkaiktdngscftskstrewlarwgiahttgipgnsqgqamveranrllkdkirvlaeg
dgfmkriptskqgellakamyalnhf