PDB entry 1vrs

View 1vrs on RCSB PDB site
Description: Crystal structure of the disulfide-linked complex between the N-terminal and C-terminal domain of the electron transfer catalyst DsbD
Class: oxidoreductase
Keywords: DsbD, immunoglobulin-like, thioredoxin-like, disulfide-linked, OXIDOREDUCTASE
Deposited on 2005-06-17, released 2005-07-12
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: 0.224
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Thiol:disulfide interchange protein dsbD
    Species: Escherichia coli str. K12 substr. [TaxId:316407]
    Gene: DSBD, DIPZ, CYCZ, CUTA2, B4136
    Database cross-references and differences (RAF-indexed):
    • Uniprot P36655 (0-End)
      • engineered (102)
    Domains in SCOPe 2.06: d1vrsa_
  • Chain 'B':
    Compound: Thiol:disulfide interchange protein dsbD
    Species: Escherichia coli str. K12 substr. [TaxId:316407]
    Gene: DSBD, DIPZ, CYCZ, CUTA2, B4136
    Database cross-references and differences (RAF-indexed):
    • Uniprot P36655 (0-End)
      • engineered (102)
    Domains in SCOPe 2.06: d1vrsb_
  • Chain 'C':
    Compound: Thiol:disulfide interchange protein dsbD
    Species: Escherichia coli str. K12 substr. [TaxId:316407]
    Gene: DSBD, DIPZ, CYCZ, CUTA2, B4136
    Database cross-references and differences (RAF-indexed):
    • Uniprot P36655
      • engineered (102)
    Domains in SCOPe 2.06: d1vrsc_
  • Chain 'D':
    Compound: Thiol:disulfide interchange protein dsbD
    Species: Escherichia coli str. K12 substr. [TaxId:316407]
    Gene: DSBD, DIPZ, CYCZ, CUTA2, B4136
    Database cross-references and differences (RAF-indexed):
    • Uniprot P36655
      • engineered (45)
    Domains in SCOPe 2.06: d1vrsd_
  • Chain 'E':
    Compound: Thiol:disulfide interchange protein dsbD
    Species: Escherichia coli str. K12 substr. [TaxId:316407]
    Gene: DSBD, DIPZ, CYCZ, CUTA2, B4136
    Database cross-references and differences (RAF-indexed):
    • Uniprot P36655
      • engineered (45)
    Domains in SCOPe 2.06: d1vrse_
  • Chain 'F':
    Compound: Thiol:disulfide interchange protein dsbD
    Species: Escherichia coli str. K12 substr. [TaxId:316407]
    Gene: DSBD, DIPZ, CYCZ, CUTA2, B4136
    Database cross-references and differences (RAF-indexed):
    • Uniprot P36655
      • engineered (45)
    Domains in SCOPe 2.06: d1vrsf_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vrsA (A:)
glfdapgrsqfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadvql
pqgvwhedefygkseiyrdrltlpvtinqasagatltvtyqgsadagfcyppetktvpls
evvannaapqpvsvpqqeqptaq

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrsA (A:)
glfdaqfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadvqlpqgv
whedefygkseiyrdrltlpvtinqasagatltvtyqgsadagfcyppetktvplsevva
n

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vrsB (B:)
glfdapgrsqfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadvql
pqgvwhedefygkseiyrdrltlpvtinqasagatltvtyqgsadagfcyppetktvpls
evvannaapqpvsvpqqeqptaq

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrsB (B:)
glfdapgrsqfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadvql
pqgvwhedefygkseiyrdrltlpvtinqasagatltvtyqgsadagfcyppetktvpls
evvan

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1vrsC (C:)
glfdapgrsqfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadvql
pqgvwhedefygkseiyrdrltlpvtinqasagatltvtyqgsadagfcyppetktvpls
evvannaapqpvsvpqqeqptaq

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrsC (C:)
sqfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadvqlpqgvwhed
efygkseiyrdrltlpvtinqasagatltvtyqgsadagfcyppetktvplse

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1vrsD (D:)
athtaqtqthlnftqiktvdelnqalveakgkpvmldlyadwcvaskefekytfsdpqvq
kaladtvllqanvtandaqdvallkhlnvlglptilffdgqgqehpqarvtgfmdaetfs
ahlrdrqphhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrsD (D:)
hlnftqiktvdelnqalveakgkpvmldlyadwcvaskefekytfsdpqvqkaladtvll
qanvtandaqdvallkhlnvlglptilffdgqgqehpqarvtgfmdaetfsahlrdrq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1vrsE (E:)
athtaqtqthlnftqiktvdelnqalveakgkpvmldlyadwcvaskefekytfsdpqvq
kaladtvllqanvtandaqdvallkhlnvlglptilffdgqgqehpqarvtgfmdaetfs
ahlrdrqphhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrsE (E:)
qthlnftqiktvdelnqalveakgkpvmldlyadwcvaskefekytfsdpqvqkaladtv
llqanvtandaqdvallkhlnvlglptilffdgqgqehpqarvtgfmdaetfsahlrd

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1vrsF (F:)
athtaqtqthlnftqiktvdelnqalveakgkpvmldlyadwcvaskefekytfsdpqvq
kaladtvllqanvtandaqdvallkhlnvlglptilffdgqgqehpqarvtgfmdaetfs
ahlrdrqphhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrsF (F:)
hlnftqiktvdelnqalveakgkpvmldlyadwcvaskefekytfsdpqvqkaladtvll
qanvtandaqdvallkhlnvlglptilffdgqgqehpqarvtgfmdaetfsahlrdrq