PDB entry 1vrl

View 1vrl on RCSB PDB site
Description: MutY adenine glycosylase in complex with DNA and soaked adenine free base
Class: hydrolase/DNA
Keywords: DNA repair, DNA glycosylase, 8-oxoguanine, protein-DNA complex, HYDROLASE/DNA COMPLEX
Deposited on 2005-03-08, released 2005-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-03-31, with a file datestamp of 2009-03-27.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.229
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MutY
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: mutY
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vrla1, d1vrla2
  • Chain 'B':
    Compound: 5'-d(*ap*ap*gp*ap*cp*(8og)p*tp*gp*gp*ap*c)-3'
  • Chain 'C':
    Compound: 5'-d(*tp*gp*tp*cp*cp*ap*(hpd)p*gp*tp*cp*t)-3'
  • Heterogens: CA, SF4, ADE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vrlA (A:)
gshmtreterfparefqrdlldwfarerrdlpwrkdrdpykvwvsevmlqqtrvetvipy
feqfidrfptlealadadedevlkaweglgyysrvrnlhaavkevktryggkvpddpdef
srlkgvgpytvgavlslaygvpepavngnvmrvlsrlflvtddiakpstrkrfeqivrei
mayenpgafnealielgalvctprrpscllcpvqaycqafaegvaeelpvkmkktavkqv
plavavladdegrvlirkrdstgllanlwefpscetdgadgkekleqmvgeqyglqvelt
epivsfehafshlvwqltvfpgrlvhggpveepyrlapedelkayafpvshqrvwreyke
wasgvrppp

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrlA (A:)
parefqrdlldwfarerrdlpwrkdrdpykvwvsevmlqqtrvetvipyfeqfidrfptl
ealadadedevlkaweglgyysrvrnlhaavkevktryggkvpddpdefsrlkgvgpytv
gavlslaygvpepavngnvmrvlsrlflvtddiakpstrkrfeqivreimayenpgafne
alielgalvctprrpscllcpvqaycqafaegvaeelpvkmkktavkqvplavavladde
grvlirkrdstgllanlwefpscetddgkekleqmvglqveltepivsfehafshlvwql
tvfpgrlvhggpveepyrlapedelkayafpvshqrvwreykewas

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.