PDB entry 1vrl
View 1vrl on RCSB PDB site
Description: MutY adenine glycosylase in complex with DNA and soaked adenine free base
Class: hydrolase/DNA
Keywords: DNA repair, DNA glycosylase, 8-oxoguanine, protein-DNA complex, HYDROLASE/DNA COMPLEX
Deposited on
2005-03-08, released
2005-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-03-31, with a file datestamp of
2009-03-27.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.229
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: MutY
Species: Geobacillus stearothermophilus [TaxId:1422]
Gene: mutY
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1vrla1, d1vrla2 - Chain 'B':
Compound: 5'-d(*ap*ap*gp*ap*cp*(8og)p*tp*gp*gp*ap*c)-3'
- Chain 'C':
Compound: 5'-d(*tp*gp*tp*cp*cp*ap*(hpd)p*gp*tp*cp*t)-3'
- Heterogens: CA, SF4, ADE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1vrlA (A:)
gshmtreterfparefqrdlldwfarerrdlpwrkdrdpykvwvsevmlqqtrvetvipy
feqfidrfptlealadadedevlkaweglgyysrvrnlhaavkevktryggkvpddpdef
srlkgvgpytvgavlslaygvpepavngnvmrvlsrlflvtddiakpstrkrfeqivrei
mayenpgafnealielgalvctprrpscllcpvqaycqafaegvaeelpvkmkktavkqv
plavavladdegrvlirkrdstgllanlwefpscetdgadgkekleqmvgeqyglqvelt
epivsfehafshlvwqltvfpgrlvhggpveepyrlapedelkayafpvshqrvwreyke
wasgvrppp
Sequence, based on observed residues (ATOM records): (download)
>1vrlA (A:)
parefqrdlldwfarerrdlpwrkdrdpykvwvsevmlqqtrvetvipyfeqfidrfptl
ealadadedevlkaweglgyysrvrnlhaavkevktryggkvpddpdefsrlkgvgpytv
gavlslaygvpepavngnvmrvlsrlflvtddiakpstrkrfeqivreimayenpgafne
alielgalvctprrpscllcpvqaycqafaegvaeelpvkmkktavkqvplavavladde
grvlirkrdstgllanlwefpscetddgkekleqmvglqveltepivsfehafshlvwql
tvfpgrlvhggpveepyrlapedelkayafpvshqrvwreykewas
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.