PDB entry 1vrg

View 1vrg on RCSB PDB site
Description: Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution
Class: ligase
Keywords: TM0716, propionyl-CoA carboxylase, beta subunit, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, LIGASE
Deposited on 2005-02-22, released 2005-03-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.157
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: propionyl-CoA carboxylase, beta subunit
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM0716
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WZH5 (12-526)
      • modified residue (12)
      • modified residue (109)
      • modified residue (116)
      • modified residue (131)
      • modified residue (196)
      • modified residue (203)
      • modified residue (228)
      • modified residue (248)
      • modified residue (421)
      • modified residue (430)
      • modified residue (442)
      • modified residue (491)
      • modified residue (503)
    Domains in SCOPe 2.08: d1vrga1, d1vrga2
  • Chain 'B':
    Compound: propionyl-CoA carboxylase, beta subunit
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM0716
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WZH5 (12-526)
      • modified residue (12)
      • modified residue (109)
      • modified residue (116)
      • modified residue (131)
      • modified residue (196)
      • modified residue (203)
      • modified residue (228)
      • modified residue (248)
      • modified residue (421)
      • modified residue (430)
      • modified residue (442)
      • modified residue (491)
      • modified residue (503)
    Domains in SCOPe 2.08: d1vrgb1, d1vrgb2
  • Chain 'C':
    Compound: propionyl-CoA carboxylase, beta subunit
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM0716
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WZH5 (12-526)
      • modified residue (12)
      • modified residue (109)
      • modified residue (116)
      • modified residue (131)
      • modified residue (196)
      • modified residue (203)
      • modified residue (228)
      • modified residue (248)
      • modified residue (421)
      • modified residue (430)
      • modified residue (442)
      • modified residue (491)
      • modified residue (503)
    Domains in SCOPe 2.08: d1vrgc1, d1vrgc2
  • Chain 'D':
    Compound: propionyl-CoA carboxylase, beta subunit
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM0716
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WZH5 (12-526)
      • modified residue (12)
      • modified residue (109)
      • modified residue (116)
      • modified residue (131)
      • modified residue (196)
      • modified residue (203)
      • modified residue (228)
      • modified residue (248)
      • modified residue (421)
      • modified residue (430)
      • modified residue (442)
      • modified residue (491)
      • modified residue (503)
    Domains in SCOPe 2.08: d1vrgd1, d1vrgd2
  • Chain 'E':
    Compound: propionyl-CoA carboxylase, beta subunit
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM0716
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WZH5 (12-526)
      • modified residue (12)
      • modified residue (109)
      • modified residue (116)
      • modified residue (131)
      • modified residue (196)
      • modified residue (203)
      • modified residue (228)
      • modified residue (248)
      • modified residue (421)
      • modified residue (430)
      • modified residue (442)
      • modified residue (491)
      • modified residue (503)
    Domains in SCOPe 2.08: d1vrge1, d1vrge2
  • Chain 'F':
    Compound: propionyl-CoA carboxylase, beta subunit
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM0716
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WZH5 (12-526)
      • modified residue (12)
      • modified residue (109)
      • modified residue (116)
      • modified residue (131)
      • modified residue (196)
      • modified residue (203)
      • modified residue (228)
      • modified residue (248)
      • modified residue (421)
      • modified residue (430)
      • modified residue (442)
      • modified residue (491)
      • modified residue (503)
    Domains in SCOPe 2.08: d1vrgf1, d1vrgf2
  • Heterogens: MG, BCT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vrgA (A:)
mgsdkihhhhhhmslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpg
tfveidkfvehrntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhak
kivklldlalkmgipvigindsggariqegvdalagygeiflrntlasgvvpqitviagp
caggavyspaltdfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahf
ladndekamslvrtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvi
krvvdhgeffevqpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirf
ldafnipiltfvdtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayi
amgskhlgadmvlawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfan
pyiaasrgyvdmvidpretrkyimralevcetkveyrpkkkhgnipl

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrgA (A:)
mslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpgtfveidkfvehr
ntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhakkivklldlalkm
gipvigindsggariqegvdalagygeiflrntlasgvvpqitviagpcaggavyspalt
dfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahfladndekamslv
rtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvikrvvdhgeffev
qpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirfldafnipiltfv
dtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayiamgskhlgadmv
lawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfanpyiaasrgyvdm
vidpretrkyimralevcetkveyrpkkkhgnipl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vrgB (B:)
mgsdkihhhhhhmslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpg
tfveidkfvehrntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhak
kivklldlalkmgipvigindsggariqegvdalagygeiflrntlasgvvpqitviagp
caggavyspaltdfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahf
ladndekamslvrtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvi
krvvdhgeffevqpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirf
ldafnipiltfvdtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayi
amgskhlgadmvlawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfan
pyiaasrgyvdmvidpretrkyimralevcetkveyrpkkkhgnipl

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrgB (B:)
mslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpgtfveidkfvehr
ntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhakkivklldlalkm
gipvigindsggariqegvdalagygeiflrntlasgvvpqitviagpcaggavyspalt
dfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahfladndekamslv
rtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvikrvvdhgeffev
qpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirfldafnipiltfv
dtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayiamgskhlgadmv
lawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfanpyiaasrgyvdm
vidpretrkyimralevcetkveyrpkkkhgnipl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1vrgC (C:)
mgsdkihhhhhhmslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpg
tfveidkfvehrntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhak
kivklldlalkmgipvigindsggariqegvdalagygeiflrntlasgvvpqitviagp
caggavyspaltdfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahf
ladndekamslvrtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvi
krvvdhgeffevqpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirf
ldafnipiltfvdtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayi
amgskhlgadmvlawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfan
pyiaasrgyvdmvidpretrkyimralevcetkveyrpkkkhgnipl

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrgC (C:)
mslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpgtfveidkfvehr
ntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhakkivklldlalkm
gipvigindsggariqegvdalagygeiflrntlasgvvpqitviagpcaggavyspalt
dfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahfladndekamslv
rtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvikrvvdhgeffev
qpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirfldafnipiltfv
dtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayiamgskhlgadmv
lawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfanpyiaasrgyvdm
vidpretrkyimralevcetkveyrpkkkhgnipl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1vrgD (D:)
mgsdkihhhhhhmslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpg
tfveidkfvehrntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhak
kivklldlalkmgipvigindsggariqegvdalagygeiflrntlasgvvpqitviagp
caggavyspaltdfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahf
ladndekamslvrtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvi
krvvdhgeffevqpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirf
ldafnipiltfvdtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayi
amgskhlgadmvlawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfan
pyiaasrgyvdmvidpretrkyimralevcetkveyrpkkkhgnipl

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrgD (D:)
mslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpgtfveidkfvehr
ntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhakkivklldlalkm
gipvigindsggariqegvdalagygeiflrntlasgvvpqitviagpcaggavyspalt
dfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahfladndekamslv
rtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvikrvvdhgeffev
qpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirfldafnipiltfv
dtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayiamgskhlgadmv
lawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfanpyiaasrgyvdm
vidpretrkyimralevcetkveyrpkkkhgnipl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1vrgE (E:)
mgsdkihhhhhhmslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpg
tfveidkfvehrntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhak
kivklldlalkmgipvigindsggariqegvdalagygeiflrntlasgvvpqitviagp
caggavyspaltdfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahf
ladndekamslvrtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvi
krvvdhgeffevqpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirf
ldafnipiltfvdtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayi
amgskhlgadmvlawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfan
pyiaasrgyvdmvidpretrkyimralevcetkveyrpkkkhgnipl

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrgE (E:)
mslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpgtfveidkfvehr
ntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhakkivklldlalkm
gipvigindsggariqegvdalagygeiflrntlasgvvpqitviagpcaggavyspalt
dfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahfladndekamslv
rtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvikrvvdhgeffev
qpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirfldafnipiltfv
dtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayiamgskhlgadmv
lawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfanpyiaasrgyvdm
vidpretrkyimralevcetkveyrpkkkhgnipl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1vrgF (F:)
mgsdkihhhhhhmslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpg
tfveidkfvehrntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhak
kivklldlalkmgipvigindsggariqegvdalagygeiflrntlasgvvpqitviagp
caggavyspaltdfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahf
ladndekamslvrtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvi
krvvdhgeffevqpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirf
ldafnipiltfvdtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayi
amgskhlgadmvlawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfan
pyiaasrgyvdmvidpretrkyimralevcetkveyrpkkkhgnipl

    Sequence, based on observed residues (ATOM records): (download) 
    >1vrgF (F:)
mslrdkieelkkiekeieqgggpekvekqhragkltawerlellldpgtfveidkfvehr
ntyfgldkvklprdgvitgvgeingrkvavfsqdftvmggslgemhakkivklldlalkm
gipvigindsggariqegvdalagygeiflrntlasgvvpqitviagpcaggavyspalt
dfivmvdqtarmfitgpnvikavtgeeisqedlggamvhnqksgnahfladndekamslv
rtllsylpsnnaeeppvedpdtsletpedildilpdnpnkgydvrdvikrvvdhgeffev
qpyfaknivigfariqgktvgivanqpsvlagvldidssdkaarfirfldafnipiltfv
dtpgylpgvaqehggiirhgakllyayseatvpkitvilrkayggayiamgskhlgadmv
lawpsaeiavmgpegaaniifkreieassnpeetrrklieeykqqfanpyiaasrgyvdm
vidpretrkyimralevcetkveyrpkkkhgnipl