PDB entry 1vp7

View 1vp7 on RCSB PDB site
Description: Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution
Class: hydrolase
Keywords: NP_881400.1, Exodeoxyribonuclease VII small subunit E.C.3.1.11.6, structural genomics, Joint Center for Structural Genomics, JCSG, PSI, Protein Structure Initiative
Deposited on 2004-10-14, released 2004-10-26
The last revision prior to the SCOP 1.73 freeze date was dated 2005-01-18, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.205
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: exodeoxyribonuclease VII small subunit
    Species: Bordetella pertussis Tohama I
    Gene: NP_881400.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7W7Q2
      • modified residue (45)
    Domains in SCOP 1.73: d1vp7a_
  • Chain 'B':
    Compound: exodeoxyribonuclease VII small subunit
    Species: Bordetella pertussis Tohama I
    Gene: NP_881400.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7W7Q2
      • modified residue (45)
    Domains in SCOP 1.73: d1vp7b_
  • Chain 'C':
    Compound: exodeoxyribonuclease VII small subunit
    Species: Bordetella pertussis Tohama I
    Gene: NP_881400.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7W7Q2
      • modified residue (45)
    Domains in SCOP 1.73: d1vp7c_
  • Chain 'D':
    Compound: exodeoxyribonuclease VII small subunit
    Species: Bordetella pertussis Tohama I
    Gene: NP_881400.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7W7Q2
      • modified residue (45)
    Domains in SCOP 1.73: d1vp7d_
  • Chain 'E':
    Compound: exodeoxyribonuclease VII small subunit
    Species: Bordetella pertussis Tohama I
    Gene: NP_881400.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7W7Q2
      • modified residue (45)
    Domains in SCOP 1.73: d1vp7e_
  • Chain 'F':
    Compound: exodeoxyribonuclease VII small subunit
    Species: Bordetella pertussis Tohama I
    Gene: NP_881400.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7W7Q2
      • modified residue (45)
    Domains in SCOP 1.73: d1vp7f_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vp7A (A:)
mgsdkihhhhhhmasskqadpqtdarplpqdfetalaeleslvsamengtlpleqslsay
rrgvelarvcqdrlaqaeqqvkvlegdllrpldpaaldde

    Sequence, based on observed residues (ATOM records): (download) 
    >1vp7A (A:)
arplpqdfetalaeleslvsamengtlpleqslsayrrgvelarvcqdrlaqaeqqvkvl
egdllrpl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vp7B (B:)
mgsdkihhhhhhmasskqadpqtdarplpqdfetalaeleslvsamengtlpleqslsay
rrgvelarvcqdrlaqaeqqvkvlegdllrpldpaaldde

    Sequence, based on observed residues (ATOM records): (download) 
    >1vp7B (B:)
qtdarplpqdfetalaeleslvsamengtlpleqslsayrrgvelarvcqdrlaqaeqqv
kvlegdllrpldpaald

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1vp7C (C:)
mgsdkihhhhhhmasskqadpqtdarplpqdfetalaeleslvsamengtlpleqslsay
rrgvelarvcqdrlaqaeqqvkvlegdllrpldpaaldde

    Sequence, based on observed residues (ATOM records): (download) 
    >1vp7C (C:)
pqtdarplpqdfetalaeleslvsamengtlpleqslsayrrgvelarvcqdrlaqaeqq
vkvlegdllrp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1vp7D (D:)
mgsdkihhhhhhmasskqadpqtdarplpqdfetalaeleslvsamengtlpleqslsay
rrgvelarvcqdrlaqaeqqvkvlegdllrpldpaaldde

    Sequence, based on observed residues (ATOM records): (download) 
    >1vp7D (D:)
arplpqdfetalaeleslvsamelpleqslsayrrgvelarvcqdrlaqaeqqvkvlegd
llrpldpaa

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1vp7E (E:)
mgsdkihhhhhhmasskqadpqtdarplpqdfetalaeleslvsamengtlpleqslsay
rrgvelarvcqdrlaqaeqqvkvlegdllrpldpaaldde

    Sequence, based on observed residues (ATOM records): (download) 
    >1vp7E (E:)
arplpqdfetalaeleslvsamengtlpleqslsayrrgvelarvcqdrlaqaeqqvkvl
egdllrp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1vp7F (F:)
mgsdkihhhhhhmasskqadpqtdarplpqdfetalaeleslvsamengtlpleqslsay
rrgvelarvcqdrlaqaeqqvkvlegdllrpldpaaldde

    Sequence, based on observed residues (ATOM records): (download) 
    >1vp7F (F:)
arplpqdfetalaeleslvsamenlpleqslsayrrgvelarvcqdrlaqaeqqvkvleg
dllrp