PDB entry 1vp4

View 1vp4 on RCSB PDB site
Description: Crystal structure of a putative aminotransferase (tm1131) from thermotoga maritima msb8 at 1.82 A resolution
Class: transferase
Keywords: Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, transferase
Deposited on 2004-10-08, released 2004-10-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: 0.18
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: aminotransferase, putative
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM1131
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X0L5 (12-424)
      • leader sequence (5-11)
      • modified residue (12)
      • modified residue (27)
      • modified residue (100)
      • modified residue (166)
      • modified residue (269)
      • modified residue (326)
      • modified residue (364)
      • modified residue (391)
      • cloning artifact (5-11)
    Domains in SCOPe 2.08: d1vp4a1, d1vp4a2
  • Chain 'B':
    Compound: aminotransferase, putative
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM1131
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X0L5 (12-424)
      • leader sequence (9-11)
      • modified residue (12)
      • modified residue (27)
      • modified residue (100)
      • modified residue (166)
      • modified residue (269)
      • modified residue (326)
      • modified residue (364)
      • modified residue (391)
      • cloning artifact (9-11)
    Domains in SCOPe 2.08: d1vp4b1, d1vp4b2
  • Heterogens: PLP, UNL, EDO, FMT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vp4A (A:)
mgsdkihhhhhhmvvnlegkiskigqnmkssiireilkfaadkdaisfgggvpdpetfpr
kelaeiakeiiekeyhytlqysttegdpvlkqqilkllermygitgldednliftvgsqq
aldligklflddesycvlddpaylgainafrqylanfvvvpleddgmdlnvlerklsefd
kngkikqvkfiyvvsnfhnpagvttslekrkalveiaekydlfiveddpygalryegetv
dpifkiggpervvllntfskvlapglrigmvagskefirkivqakqsadlcspaithrla
arylerydlleqlkptielyrrkrtvmlnaleeyfsdipgvkwvksegglfiwltlpegf
dtwemfeyakrkkvfyvpgrvfkvydepspsmrlsfclppdekivegikrlrevvleygk
ekhll

    Sequence, based on observed residues (ATOM records): (download) 
    >1vp4A (A:)
ihhhhhhmvvnlegkiskigqnmkssiireilkfaadkdaisfgggvpdpetfprkelae
iakeiiekeyhytlqysttegdpvlkqqilkllermygitgldednliftvgsqqaldli
gklflddesycvlddpaylgainafrqylanfvvvpleddgmdlnvlerklsefdkngki
kqvkfiyvvsnfhnpagvttslekrkalveiaekydlfiveddpygalryegetvdpifk
iggpervvllntfskvlapglrigmvagskefirkivqakqsadlcspaithrlaaryle
rydlleqlkptielyrrkrtvmlnaleeyfsdipgvkwvksegglfiwltlpegfdtwem
feyakrkkvfyvpgrvfkvydepspsmrlsfclppdekivegikrlrevvleygkekhll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vp4B (B:)
mgsdkihhhhhhmvvnlegkiskigqnmkssiireilkfaadkdaisfgggvpdpetfpr
kelaeiakeiiekeyhytlqysttegdpvlkqqilkllermygitgldednliftvgsqq
aldligklflddesycvlddpaylgainafrqylanfvvvpleddgmdlnvlerklsefd
kngkikqvkfiyvvsnfhnpagvttslekrkalveiaekydlfiveddpygalryegetv
dpifkiggpervvllntfskvlapglrigmvagskefirkivqakqsadlcspaithrla
arylerydlleqlkptielyrrkrtvmlnaleeyfsdipgvkwvksegglfiwltlpegf
dtwemfeyakrkkvfyvpgrvfkvydepspsmrlsfclppdekivegikrlrevvleygk
ekhll

    Sequence, based on observed residues (ATOM records): (download) 
    >1vp4B (B:)
hhhmvvnlegkiskigqnmkssiireilkfaadkdaisfgggvpdpetfprkelaeiake
iiekeyhytlqysttegdpvlkqqilkllermygitgldednliftvgsqqaldligklf
lddesycvlddpaylgainafrqylanfvvvpleddgmdlnvlerklsefdkngkikqvk
fiyvvsnfhnpagvttslekrkalveiaekydlfiveddpygalryegetvdpifkiggp
ervvllntfskvlapglrigmvagskefirkivqakqsadlcspaithrlaarylerydl
leqlkptielyrrkrtvmlnaleeyfsdipgvkwvksegglfiwltlpegfdtwemfeya
krkkvfyvpgrvfkvydepspsmrlsfclppdekivegikrlrevvleygkekhll