SCOPe 2.07: Structural Classification of Proteins

PDB entry 1vlp

View 1vlp on RCSB PDB site
Description: Crystal structure of a putative nicotinate phosphoribosyltransferase (yor209c, npt1) from saccharomyces cerevisiae at 1.75 A resolution
Class: transferase
Keywords: Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, transferase
Deposited on 2004-08-06, released 2004-08-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-04, with a file datestamp of 2017-09-29.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Nicotinate phosphoribosyltransferase
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: NPT1, YOR209C
Database cross-references and differences (RAF-indexed):
- Uniprot P39683 (12-End)
  - leader sequence (9-11)
  - modified residue (12)
  - modified residue (25)
  - modified residue (30)
  - modified residue (203)
  - modified residue (207)
  - modified residue (247)
  - modified residue (264)
  - modified residue (358)
  - modified residue (410)
Domains in SCOPe 2.07: d1vlpa1, d1vlpa2, d1vlpa3
Chain 'B':
Compound: Nicotinate phosphoribosyltransferase
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: NPT1, YOR209C
Database cross-references and differences (RAF-indexed):
- Uniprot P39683 (12-End)
  - modified residue (12)
  - modified residue (25)
  - modified residue (30)
  - modified residue (203)
  - modified residue (207)
  - modified residue (247)
  - modified residue (264)
  - modified residue (358)
  - modified residue (410)
Domains in SCOPe 2.07: d1vlpb1, d1vlpb2
Chain 'C':
Compound: Nicotinate phosphoribosyltransferase
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: NPT1, YOR209C
Database cross-references and differences (RAF-indexed):
- Uniprot P39683 (12-End)
  - leader sequence (10-11)
  - modified residue (12)
  - modified residue (25)
  - modified residue (30)
  - modified residue (203)
  - modified residue (207)
  - modified residue (247)
  - modified residue (264)
  - modified residue (358)
  - modified residue (410)
Domains in SCOPe 2.07: d1vlpc1, d1vlpc2, d1vlpc3
Chain 'D':
Compound: Nicotinate phosphoribosyltransferase
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: NPT1, YOR209C
Database cross-references and differences (RAF-indexed):
- Uniprot P39683 (12-End)
  - leader sequence (11)
  - modified residue (12)
  - modified residue (25)
  - modified residue (30)
  - modified residue (203)
  - modified residue (207)
  - modified residue (247)
  - modified residue (264)
  - modified residue (358)
  - modified residue (410)
Domains in SCOPe 2.07: d1vlpd1, d1vlpd2, d1vlpd3
Heterogens: PO4, CL, MES, EDO, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1vlpA (A:)
mgsdkihhhhhhmsepvikslldtdmykitmhaavftnfpdvtvtykytnrssqltfnke
ainwlkeqfsylgnlrfteeeieylkqeipylpsayikyisssnyklhpeeqisftseei
egkpthyklkilvsgswkdtilyeipllsliseayfkfvdidwdyenqleqaekkaetlf
dngirfsefgtrrrrslkaqdlimqgimkavngnpdrnkslllgtsnilfakkygvkpig
tvahewvmgvasisedylhanknamdcwintfgaknaglaltdtfgtddflksfrppysd
ayvgvrqdsgdpveytkkishhyhdvlklpkfskiicysdslnvekaityshaakengml
atfgigtnftndfrkksepqvkseplnivikllevngnhaikisdnlgknmgdpatvkrv
keelgyterswsgdneahrwt

Sequence, based on observed residues (ATOM records): (download)

>1vlpA (A:)
hhhmsepvikslldtdmykitmhaavftnfpdvtvtykytnrssqltfnkeainwlkeqf
sylgnlrfteeeieylkqeipylpsayikyisssnyklhpeeqisftseeiegkpthykl
kilvsgswkdtilyeipllsliseayfkfvdidwdyenqleqaekkaetlfdngirfsef
gtrrrrslkaqdlimqgimkavngnpdrnkslllgtsnilfakkygvkpigtvahewvmg
vasisedylhanknamdcwintfgaknaglaltdtfgtddflksfrppysdayvgvrqds
gdpveytkkishhyhdvlklpkfskiicysdslnvekaityshaakengmlatfgigtnf
tndfrkksepqvkseplnivikllevngnhaikisdnlgknmgdpatvkrvkeelgyt

Chain 'B':
Sequence, based on SEQRES records: (download)

>1vlpB (B:)
mgsdkihhhhhhmsepvikslldtdmykitmhaavftnfpdvtvtykytnrssqltfnke
ainwlkeqfsylgnlrfteeeieylkqeipylpsayikyisssnyklhpeeqisftseei
egkpthyklkilvsgswkdtilyeipllsliseayfkfvdidwdyenqleqaekkaetlf
dngirfsefgtrrrrslkaqdlimqgimkavngnpdrnkslllgtsnilfakkygvkpig
tvahewvmgvasisedylhanknamdcwintfgaknaglaltdtfgtddflksfrppysd
ayvgvrqdsgdpveytkkishhyhdvlklpkfskiicysdslnvekaityshaakengml
atfgigtnftndfrkksepqvkseplnivikllevngnhaikisdnlgknmgdpatvkrv
keelgyterswsgdneahrwt

Sequence, based on observed residues (ATOM records): (download)

>1vlpB (B:)
msepvikslldtdmykitmhaavftnfpdvtvtykytnrssqltfnkeainwlkeqfsyl
gnlrfteeeieylkqeipylpsayikyisssnyklhpeeqisftseeiegkpthyklkil
vsgswkdtilyeipllsliseayfkfvdidwdyenqleqaekkaetlfdngirfsefgtr
rrrslkaqdlimqgimkavngnpdrnkslllgtsnilfakkygvkpigtvahewvmgvas
isedylhanknamdcwintfgaknaglaltdtfgtddflksfrppysdayvgvrqdsgdp
veytkkishhyhdvlklpkfskiicysdslnvekaityshaakengmlatfgigtnftnd
frkksepqvkseplnivikllevngnhaikisdnlgknmgdpatvkrvkeelgytersw

Chain 'C':
Sequence, based on SEQRES records: (download)

>1vlpC (C:)
mgsdkihhhhhhmsepvikslldtdmykitmhaavftnfpdvtvtykytnrssqltfnke
ainwlkeqfsylgnlrfteeeieylkqeipylpsayikyisssnyklhpeeqisftseei
egkpthyklkilvsgswkdtilyeipllsliseayfkfvdidwdyenqleqaekkaetlf
dngirfsefgtrrrrslkaqdlimqgimkavngnpdrnkslllgtsnilfakkygvkpig
tvahewvmgvasisedylhanknamdcwintfgaknaglaltdtfgtddflksfrppysd
ayvgvrqdsgdpveytkkishhyhdvlklpkfskiicysdslnvekaityshaakengml
atfgigtnftndfrkksepqvkseplnivikllevngnhaikisdnlgknmgdpatvkrv
keelgyterswsgdneahrwt

Sequence, based on observed residues (ATOM records): (download)

>1vlpC (C:)
hhmsepvikslldtdmykitmhaavftnfpdvtvtykytnrssqltfnkeainwlkeqfs
ylgnlrfteeeieylkqeipylpsayikyisssnyklhpeeqisftseeiegkpthyklk
ilvsgswkdtilyeipllsliseayfkfvdidwdyenqleqaekkaetlfdngirfsefg
trrrrslkaqdlimqgimkavngnpdrnkslllgtsnilfakkygvkpigtvahewvmgv
asisedylhanknamdcwintfgaknaglaltdtfgtddflksfrppysdayvgvrqdsg
dpveytkkishhyhdvlklpkfskiicysdslnvekaityshaakengmlatfgigtnft
ndfrkksepqvkseplnivikllevngnhaikisdnlgknmgdpatvkrvkeelgyte

Chain 'D':
Sequence, based on SEQRES records: (download)

>1vlpD (D:)
mgsdkihhhhhhmsepvikslldtdmykitmhaavftnfpdvtvtykytnrssqltfnke
ainwlkeqfsylgnlrfteeeieylkqeipylpsayikyisssnyklhpeeqisftseei
egkpthyklkilvsgswkdtilyeipllsliseayfkfvdidwdyenqleqaekkaetlf
dngirfsefgtrrrrslkaqdlimqgimkavngnpdrnkslllgtsnilfakkygvkpig
tvahewvmgvasisedylhanknamdcwintfgaknaglaltdtfgtddflksfrppysd
ayvgvrqdsgdpveytkkishhyhdvlklpkfskiicysdslnvekaityshaakengml
atfgigtnftndfrkksepqvkseplnivikllevngnhaikisdnlgknmgdpatvkrv
keelgyterswsgdneahrwt

Sequence, based on observed residues (ATOM records): (download)

>1vlpD (D:)
hmsepvikslldtdmykitmhaavftnfpdvtvtykytnrssqltfnkeainwlkeqfsy
lgnlrfteeeieylkqeipylpsayikyisssnyklhpeeqisftseeiegkpthyklki
lvsgswkdtilyeipllsliseayfkfvdidwdyenqleqaekkaetlfdngirfsefgt
rrrrslkaqdlimqgimkavngnpdrnkslllgtsnilfakkygvkpigtvahewvmgva
sisedylhanknamdcwintfgaknaglaltdtfgtddflksfrppysdayvgvrqdsgd
pveytkkishhyhdvlklpkfskiicysdslnvekaityshaakengmlatfgigtnftn
dfrkksepqvkseplnivikllevngnhaikisdnlgknmgdpatvkrvkeelgyt