SCOPe 2.08: Structural Classification of Proteins

PDB entry 1vl6

View 1vl6 on RCSB PDB site
Description: Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution
Class: oxidoreductase
Keywords: TM0542, NAD-DEPENDENT MALIC ENZYME, STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, Joint Center for Structural Genomics, OXIDOREDUCTASE
Deposited on 2004-07-13, released 2004-08-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: 0.194
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Malate oxidoreductase
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM0542
Database cross-references and differences (RAF-indexed):
- Uniprot Q9WZ12 (12-387)
  - leader sequence (11)
  - see remark 999 (12)
  - see remark 999 (17)
  - modified residue (95)
  - modified residue (158)
  - modified residue (283)
  - modified residue (333)
  - modified residue (347)
  - modified residue (373)
Domains in SCOPe 2.08: d1vl6a1, d1vl6a2, d1vl6a3
Chain 'B':
Compound: Malate oxidoreductase
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM0542
Database cross-references and differences (RAF-indexed):
- Uniprot Q9WZ12 (12-387)
  - leader sequence (11)
  - see remark 999 (12)
  - see remark 999 (17)
  - modified residue (95)
  - modified residue (158)
  - modified residue (333)
  - modified residue (347)
  - modified residue (373)
Domains in SCOPe 2.08: d1vl6b1, d1vl6b2, d1vl6b3
Chain 'C':
Compound: Malate oxidoreductase
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM0542
Database cross-references and differences (RAF-indexed):
- Uniprot Q9WZ12 (12-387)
  - leader sequence (11)
  - see remark 999 (12)
  - see remark 999 (17)
  - modified residue (95)
  - modified residue (158)
  - modified residue (283)
  - modified residue (333)
  - modified residue (347)
  - modified residue (373)
Domains in SCOPe 2.08: d1vl6c1, d1vl6c2, d1vl6c3
Chain 'D':
Compound: Malate oxidoreductase
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM0542
Database cross-references and differences (RAF-indexed):
- Uniprot Q9WZ12 (12-387)
  - leader sequence (11)
  - see remark 999 (12)
  - see remark 999 (17)
  - modified residue (95)
  - modified residue (158)
  - modified residue (283)
  - modified residue (333)
  - modified residue (347)
  - modified residue (373)
Domains in SCOPe 2.08: d1vl6d1, d1vl6d2, d1vl6d3
Heterogens: HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1vl6A (A:)
mgsdkihhhhhhvdalevhrflkgkirtalpvekvdretlsllytpgvadvaracaedpe
ktyvytsrwntvavvsdgsavlglgnigpygalpvmegkaflfkafadidafpiclsese
eekiisivkslepsfgginledigapkcfrilqrlseemnipvfhddqqgtavvvsaafl
nalkltekkieevkvvvngigaagynivkflldlgvknvvavdrkgilnendpetclney
hleiaritnperlsgdletalegadffigvsrgnilkpewikkmsrkpvifalanpvpei
dpelareagafivatgrsdhpnqvnnllafpgimkgavekrskitknmllsaveaiarsc
epeperiipeafdmkvhlnvytavkgsa

Sequence, based on observed residues (ATOM records): (download)

>1vl6A (A:)
hvdalevhrflkgkirtalpvekvdretlsllytpgvadvaracaedpektyvytsrwnt
vavvsdgsavlglgnigpygalpvmegkaflfkafadidafpiclseseeekiisivksl
epsfgginledigapkcfrilqrlseemnipvfhddqqgtavvvsaaflnalkltekkie
evkvvvngigaagynivkflldlgvknvvavdrkgilnendpetclneyhleiaritnpe
rlsgdletalegadffigvsrgnilkpewikkmsrkpvifalanpvpeidpelareagaf
ivatgrsdhpnqvnnllafpgimkgavekrskitknmllsaveaiarscepeperiipea
fdmkvhlnvytavkgsa

Chain 'B':
Sequence, based on SEQRES records: (download)

>1vl6B (B:)
mgsdkihhhhhhvdalevhrflkgkirtalpvekvdretlsllytpgvadvaracaedpe
ktyvytsrwntvavvsdgsavlglgnigpygalpvmegkaflfkafadidafpiclsese
eekiisivkslepsfgginledigapkcfrilqrlseemnipvfhddqqgtavvvsaafl
nalkltekkieevkvvvngigaagynivkflldlgvknvvavdrkgilnendpetclney
hleiaritnperlsgdletalegadffigvsrgnilkpewikkmsrkpvifalanpvpei
dpelareagafivatgrsdhpnqvnnllafpgimkgavekrskitknmllsaveaiarsc
epeperiipeafdmkvhlnvytavkgsa

Sequence, based on observed residues (ATOM records): (download)

>1vl6B (B:)
hvdalevhrflkgkirtalpvekvdretlsllytpgvadvaracaedpektyvytsrwnt
vavvsdgsavlglgnigpygalpvmegkaflfkafadidafpiclseseeekiisivksl
epsfgginledigapkcfrilqrlseemnipvfhddqqgtavvvsaaflnalkltekvvv
ngigaagynivkflldlgvknvvavdrkgilnendpetclneyhleiaritnperlsgdl
etalegadffigvsrkpewvifalanpvpelareagafivatgrsdhpnqvnnllafpgi
mkgavekrskitknmllsaveaiarscepeperiipeafdmkvhlnvytavkgsa

Chain 'C':
Sequence, based on SEQRES records: (download)

>1vl6C (C:)
mgsdkihhhhhhvdalevhrflkgkirtalpvekvdretlsllytpgvadvaracaedpe
ktyvytsrwntvavvsdgsavlglgnigpygalpvmegkaflfkafadidafpiclsese
eekiisivkslepsfgginledigapkcfrilqrlseemnipvfhddqqgtavvvsaafl
nalkltekkieevkvvvngigaagynivkflldlgvknvvavdrkgilnendpetclney
hleiaritnperlsgdletalegadffigvsrgnilkpewikkmsrkpvifalanpvpei
dpelareagafivatgrsdhpnqvnnllafpgimkgavekrskitknmllsaveaiarsc
epeperiipeafdmkvhlnvytavkgsa

Sequence, based on observed residues (ATOM records): (download)

>1vl6C (C:)
hvdalevhrflkgkirtalpvekvdretlsllytpgvadvaracaedpektyvytsrwnt
vavvsdgsavlglgnigpygalpvmegkaflfkafadidafpiclseseeekiisivksl
epsfgginledigapkcfrilqrlseemnipvfhddqqgtavvvsaaflnalkltekkie
evkvvvngigaagynivkflldlgvknvvavdrkgilnendpetclneyhleiaritnpe
rlsgdletalegadffigvsrgnilkpewikkmsrkpvifalanpvpeidpelareagaf
ivatgrsdhpnqvnnllafpgimkgavekrskitknmllsaveaiarscepeperiipea
fdmkvhlnvytavkgsa

Chain 'D':
Sequence, based on SEQRES records: (download)

>1vl6D (D:)
mgsdkihhhhhhvdalevhrflkgkirtalpvekvdretlsllytpgvadvaracaedpe
ktyvytsrwntvavvsdgsavlglgnigpygalpvmegkaflfkafadidafpiclsese
eekiisivkslepsfgginledigapkcfrilqrlseemnipvfhddqqgtavvvsaafl
nalkltekkieevkvvvngigaagynivkflldlgvknvvavdrkgilnendpetclney
hleiaritnperlsgdletalegadffigvsrgnilkpewikkmsrkpvifalanpvpei
dpelareagafivatgrsdhpnqvnnllafpgimkgavekrskitknmllsaveaiarsc
epeperiipeafdmkvhlnvytavkgsa

Sequence, based on observed residues (ATOM records): (download)

>1vl6D (D:)
hvdalevhrflkgkirtalpvekvdretlsllytpgvadvaracaedpektyvytsrwnt
vavvsdgsavlglgnigpygalpvmegkaflfkafadidafpiclseseeekiisivksl
epsfgginledigapkcfrilqrlseemnipvfhddqqgtavvvsaaflnalkltekkie
evkvvvngigaagynivkflldlgvknvvavdrkgilnendpetclneyhleiaritnpe
rlsgdletalegadffigvsrgnilkpewikkmsrkpvifalanpvpeidpelareagaf
ivatgrsdhpnqvnnllafpgimkgavekrskitknmllsaveaiarscepeperiipea
fdmkvhlnvytavkgsa