PDB entry 1vl0
View 1vl0 on RCSB PDB site
Description: crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution
Class: oxidoreductase
Keywords: dtdp-4-dehydrorhamnose reductase, rfbd ortholog, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi, oxidoreductase
Deposited on
2004-06-30, released
2004-08-17
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.171
AEROSPACI score: 0.46
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DTDP-4-dehydrorhamnose reductase, rfbD ortholog
Species: Clostridium acetobutylicum [TaxId:272562]
Gene: CAC2315
Database cross-references and differences (RAF-indexed):
- Uniprot Q97GQ1 (12-291)
- leader sequence (11)
- modified residue (12)
- modified residue (173)
- modified residue (266)
- modified residue (291)
Domains in SCOPe 2.03: d1vl0a_ - Chain 'B':
Compound: DTDP-4-dehydrorhamnose reductase, rfbD ortholog
Species: Clostridium acetobutylicum [TaxId:272562]
Gene: CAC2315
Database cross-references and differences (RAF-indexed):
- Uniprot Q97GQ1 (12-291)
- modified residue (12)
- modified residue (173)
- modified residue (266)
- modified residue (291)
Domains in SCOPe 2.03: d1vl0b_ - Chain 'C':
Compound: DTDP-4-dehydrorhamnose reductase, rfbD ortholog
Species: Clostridium acetobutylicum [TaxId:272562]
Gene: CAC2315
Database cross-references and differences (RAF-indexed):
- Uniprot Q97GQ1 (12-291)
- leader sequence (11)
- modified residue (12)
- modified residue (173)
- modified residue (266)
- modified residue (291)
Domains in SCOPe 2.03: d1vl0c_ - Heterogens: NAI, UNL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1vl0A (A:)
mgsdkihhhhhhmkilitgangqlgreiqkqlkgknveviptdvqdlditnvlavnkffn
ekkpnvvincaahtavdkceeqydlaykinaigpknlaaaaysvgaeivqistdyvfdge
akepitefdevnpqsaygktklegenfvkalnpkyyivrtawlygdgnnfvktminlgkt
hdelkvvhdqvgtptstvdlarvvlkvideknygtfhctckgicswydfaveifrltgid
vkvtpctteefprpakrpkysvlrnymlelttgditrewkeslkeyidllqm
Sequence, based on observed residues (ATOM records): (download)
>1vl0A (A:)
hmkilitgangqlgreiqkqlkgknveviptdvqdlditnvlavnkffnekkpnvvinca
ahtavdkceeqydlaykinaigpknlaaaaysvgaeivqistdyvfdgeakepitefdev
npqsaygktklegenfvkalnpkyyivrtawlygdgnnfvktminlgkthdelkvvhdqv
gtptstvdlarvvlkvideknygtfhctckgicswydfaveifrltgidvkvtpctteef
prpakrpkysvlrnymlelttgditrewkeslkeyidllqm
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1vl0B (B:)
mgsdkihhhhhhmkilitgangqlgreiqkqlkgknveviptdvqdlditnvlavnkffn
ekkpnvvincaahtavdkceeqydlaykinaigpknlaaaaysvgaeivqistdyvfdge
akepitefdevnpqsaygktklegenfvkalnpkyyivrtawlygdgnnfvktminlgkt
hdelkvvhdqvgtptstvdlarvvlkvideknygtfhctckgicswydfaveifrltgid
vkvtpctteefprpakrpkysvlrnymlelttgditrewkeslkeyidllqm
Sequence, based on observed residues (ATOM records): (download)
>1vl0B (B:)
mkilitgangqlgreiqkqlkgknveviptdvqdlditnvlavnkffnekkpnvvincaa
htavdkceeqydlaykinaigpknlaaaaysvgaeivqistdyvfdgeakepitefdevn
pqsaygktklegenfvkalnpkyyivrtawlygdgnnfvktminlgkthdelkvvhdqvg
tptstvdlarvvlkvideknygtfhctckgicswydfaveifrltgidvkvtpctteefp
rpakrpkysvlrnymlelttgditrewkeslkeyidllqm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1vl0C (C:)
mgsdkihhhhhhmkilitgangqlgreiqkqlkgknveviptdvqdlditnvlavnkffn
ekkpnvvincaahtavdkceeqydlaykinaigpknlaaaaysvgaeivqistdyvfdge
akepitefdevnpqsaygktklegenfvkalnpkyyivrtawlygdgnnfvktminlgkt
hdelkvvhdqvgtptstvdlarvvlkvideknygtfhctckgicswydfaveifrltgid
vkvtpctteefprpakrpkysvlrnymlelttgditrewkeslkeyidllqm
Sequence, based on observed residues (ATOM records): (download)
>1vl0C (C:)
hmkilitgangqlgreiqkqlkgknveviptdvqdlditnvlavnkffnekkpnvvinca
ahtavdkceeqydlaykinaigpknlaaaaysvgaeivqistdyvfdgeakepitefdev
npqsaygktklegenfvkalnpkyyivrtawlygdgnnfvktminlgkthdelkvvhdqv
gtptstvdlarvvlkvideknygtfhctckgicswydfaveifrltgidvkvtpctteef
prpakrpkysvlrnymlelttgditrewkeslkeyidllqm