SCOPe 2.06: Structural Classification of Proteins

PDB entry 1vkz

View 1vkz on RCSB PDB site
Description: Crystal structure of Phosphoribosylamine--glycine ligase (TM1250) from Thermotoga maritima at 2.30 A resolution
Class: ligase
Keywords: TM1250, PHOSPHORIBOSYLAMINE--GLYCINE LIGASE, STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, Joint Center for Structural Genomics, LIGASE
Deposited on 2004-06-29, released 2004-08-24
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.216
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Phosphoribosylamine--glycine ligase
Species: Thermotoga maritima [TaxId:2336]
Gene: purD, TM1250
Database cross-references and differences (RAF-indexed):
- Uniprot Q9X0X7
  - modified residue (113)
  - modified residue (199)
  - modified residue (220)
  - modified residue (231)
  - modified residue (274)
  - modified residue (318)
  - modified residue (378)
Domains in SCOPe 2.06: d1vkza1, d1vkza2, d1vkza3
Chain 'B':
Compound: Phosphoribosylamine--glycine ligase
Species: Thermotoga maritima [TaxId:2336]
Gene: purD, TM1250
Database cross-references and differences (RAF-indexed):
- Uniprot Q9X0X7
  - modified residue (113)
  - modified residue (199)
  - modified residue (220)
  - modified residue (231)
  - modified residue (274)
  - modified residue (318)
  - modified residue (378)
Domains in SCOPe 2.06: d1vkzb1, d1vkzb2, d1vkzb3
Heterogens: EDO, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1vkzA (A:)
mgsdkihhhhhhmkavrvhilgsggrehaigwafakqgyevhfypgnagtkrdgtnhpye
gektlkaipeedivipgseeflvegvsnwrsnvfgpvkevarlegskvyakrfmkkygir
tarfevaetpeelrekikkfsppyvikadglargkgvlildskeetiekgskliigelik
gvkgpvvideflagnelsamavvngrnfvilpfvrdykrlmdgdrgpntggmgswgpvei
psdtikkieelfdktlwgvekegyayrgflylglmlhdgdpyileynvrlgdpetevivt
lnpegfvnavlegyrggkmepveprgfavdvvlaargypdapekgkeitlpeegliffag
vaekdgklvtnggrvlhcmgtgetkeearrkayelaekvhfegktyrrdial

Sequence, based on observed residues (ATOM records): (download)

>1vkzA (A:)
vrvhilgsggrehaigwafakqgyevhfypgnagtkrdgtnhpyegektlkaipeedivi
pgseeflversnvfgpvkevarlegskvyakrfmkkygirtarfevaetpeelrekikkf
sppyvikadglargkgvlildskeetiekgskliigelikgvkgpvvideflagnelsam
avvngrnfvilpfvrdykrlmdgdrgpntggmgswgpveipsdtikkieelfdktlwgve
kegyayrgflylglmlhdgdpyileynvrlgdpetevivtlnpegfvnavlegyrggkme
pveprgfavdvvlaargypdapekgkeitlpeegliffagvaekdgklvtnggrvlhcmg
tgetkeearrkayelaekvhfegktyrrdia

Chain 'B':
Sequence, based on SEQRES records: (download)

>1vkzB (B:)
mgsdkihhhhhhmkavrvhilgsggrehaigwafakqgyevhfypgnagtkrdgtnhpye
gektlkaipeedivipgseeflvegvsnwrsnvfgpvkevarlegskvyakrfmkkygir
tarfevaetpeelrekikkfsppyvikadglargkgvlildskeetiekgskliigelik
gvkgpvvideflagnelsamavvngrnfvilpfvrdykrlmdgdrgpntggmgswgpvei
psdtikkieelfdktlwgvekegyayrgflylglmlhdgdpyileynvrlgdpetevivt
lnpegfvnavlegyrggkmepveprgfavdvvlaargypdapekgkeitlpeegliffag
vaekdgklvtnggrvlhcmgtgetkeearrkayelaekvhfegktyrrdial

Sequence, based on observed residues (ATOM records): (download)

>1vkzB (B:)
vrvhilgsggrehaigwafakqgyevhfypgnagtkrdgtnhpyegektlkaipeedivi
pgseeflversnvfgpvkevarlegskvyakrfmkkygirtarfevaetpeelrekikkf
sppyvikadglargkgvlildskeetiekgskliigelikgvkgpvvideflagnelsam
avvngrnfvilpfvrdykrlmdgdrgpntggmgswgpveipsdtikkieelfdktlwgve
kegyayrgflylglmlhdgdpyileynvrlgdpetevivtlnpegfvnavlegyrggkme
pveprgfavdvvlaargypdapekgkeitlpeegliffagvaekdgklvtnggrvlhcmg
tgetkeearrkayelaekvhfegktyrrdia