PDB entry 1vkp

View 1vkp on RCSB PDB site
Description: x-ray structure of gene product from arabidopsis thaliana at5g08170, agmatine iminohydrolase
Class: hydrolase
Keywords: structural genomics, protein structure initiative, At5g08170, POLYAMINE BIOSYNTHESIS, AGMATINE IMINOHYDROLASE, AIH, AGMATINE DEIMINASE, N-CARBAMOYLPUTRESCINE, PUTRESCINE, PSI, Center for Eukaryotic Structural Genomics, CESG, HYDROLASE
Deposited on 2004-06-15, released 2004-08-17
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-04, with a file datestamp of 2017-09-29.
Experiment type: XRAY
Resolution: 1.53 Å
R-factor: N/A
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: agmatine iminohydrolase
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: At5g08170
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GWW7
      • modified residue (14)
      • modified residue (84)
      • modified residue (86)
      • modified residue (158)
      • modified residue (189)
      • modified residue (227)
      • modified residue (283)
    Domains in SCOPe 2.07: d1vkpa_
  • Chain 'B':
    Compound: agmatine iminohydrolase
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: At5g08170
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GWW7
      • modified residue (14)
      • modified residue (84)
      • modified residue (86)
      • modified residue (158)
      • modified residue (189)
      • modified residue (227)
      • modified residue (283)
    Domains in SCOPe 2.07: d1vkpb_
  • Heterogens: MG, EDO, MPO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vkpA (A:)
meesrespaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepv
tvcaspaqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidw
nfnawggandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteec
llnknrnphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvlls
wtddetdpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaip
rlagtrlaasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivla
ggnihcitqqqpaeptsvaengh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vkpA (A:)
respaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvca
spaqwenarkqlpedirvvemsmndswfrdsgptfivrkrnrniagidwnfnawggandg
cyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnphms
keqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpqye
rsvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaasy
vnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihcitqqq
paept

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vkpB (B:)
meesrespaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepv
tvcaspaqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidw
nfnawggandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteec
llnknrnphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvlls
wtddetdpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaip
rlagtrlaasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivla
ggnihcitqqqpaeptsvaengh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vkpB (B:)
spaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvcasp
aqwenarkqlpedirvvemsmndswfrdsgptfivrkrnrniagidwnfnawggandgcy
ndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnphmske
qieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpqyers
vealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaasyvn
fyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihcitqqqpa
ept