PDB entry 1vkf

View 1vkf on RCSB PDB site
Description: crystal structure of a glycerol uptake operon antiterminator-related protein (tm1436) from thermotoga maritima msb8 at 1.65 a resolution
Class: transcription
Keywords: glycerol uptake operon antiterminator-related protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi, transcription
Deposited on 2004-05-13, released 2004-05-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: 0.186
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerol uptake operon antiterminator-related protein
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM1436
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1F0 (12-End)
      • modified residue (12)
      • modified residue (23)
      • modified residue (62)
      • modified residue (183)
    Domains in SCOPe 2.06: d1vkfa_
  • Chain 'B':
    Compound: glycerol uptake operon antiterminator-related protein
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM1436
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1F0 (12-End)
      • modified residue (12)
      • modified residue (23)
      • modified residue (62)
      • modified residue (183)
    Domains in SCOPe 2.06: d1vkfb_
  • Chain 'C':
    Compound: glycerol uptake operon antiterminator-related protein
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM1436
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1F0 (12-End)
      • modified residue (12)
      • modified residue (23)
      • modified residue (62)
      • modified residue (183)
    Domains in SCOPe 2.06: d1vkfc_
  • Chain 'D':
    Compound: glycerol uptake operon antiterminator-related protein
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: TM1436
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1F0 (12-End)
      • modified residue (12)
      • modified residue (23)
      • modified residue (62)
      • modified residue (183)
    Domains in SCOPe 2.06: d1vkfd_
  • Heterogens: PO4, CIT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vkfA (A:)
mgsdkihhhhhhmfkgiiaalwdmdsigeiepdvvfllksdilnlkfhlkilkdrgktvf
vdmdfvnglgegeeailfvkkagadgiitikpknyvvakkngipavlrffaldskaverg
ieqietlgvdvvevlpgavapkvarkipgrtviaaglveteeeareilkhvsaistssri
lwkmkflp

    Sequence, based on observed residues (ATOM records): (download) 
    >1vkfA (A:)
mfkgiiaalwdmdsigeiepdvvfllksdilnlkfhlkilkdrgktvfvdmdfvnglgeg
eeailfvkkagadgiitikpknyvvakkngipavlrffaldskavergieqietlgvdvv
evlpgavapkvarkipgrtviaaglveteeeareilkhvsaistssrilwkm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vkfB (B:)
mgsdkihhhhhhmfkgiiaalwdmdsigeiepdvvfllksdilnlkfhlkilkdrgktvf
vdmdfvnglgegeeailfvkkagadgiitikpknyvvakkngipavlrffaldskaverg
ieqietlgvdvvevlpgavapkvarkipgrtviaaglveteeeareilkhvsaistssri
lwkmkflp

    Sequence, based on observed residues (ATOM records): (download) 
    >1vkfB (B:)
mfkgiiaalwdmdsigeiepdvvfllksdilnlkfhlkilkdrgktvfvdmdfvnglgeg
eeailfvkkagadgiitikpknyvvakkngipavlrffaldskavergieqietlgvdvv
evlpgavapkvarkipgrtviaaglveteeeareilkhvsaistssrilwkmk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1vkfC (C:)
mgsdkihhhhhhmfkgiiaalwdmdsigeiepdvvfllksdilnlkfhlkilkdrgktvf
vdmdfvnglgegeeailfvkkagadgiitikpknyvvakkngipavlrffaldskaverg
ieqietlgvdvvevlpgavapkvarkipgrtviaaglveteeeareilkhvsaistssri
lwkmkflp

    Sequence, based on observed residues (ATOM records): (download) 
    >1vkfC (C:)
mfkgiiaalwdmdsigeiepdvvfllksdilnlkfhlkilkdrgktvfvdmdfvnglgeg
eeailfvkkagadgiitikpknyvvakkngipavlrffaldskavergieqietlgvdvv
evlpgavapkvarkipgrtviaaglveteeeareilkhvsaistssrilwkmk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1vkfD (D:)
mgsdkihhhhhhmfkgiiaalwdmdsigeiepdvvfllksdilnlkfhlkilkdrgktvf
vdmdfvnglgegeeailfvkkagadgiitikpknyvvakkngipavlrffaldskaverg
ieqietlgvdvvevlpgavapkvarkipgrtviaaglveteeeareilkhvsaistssri
lwkmkflp

    Sequence, based on observed residues (ATOM records): (download) 
    >1vkfD (D:)
mfkgiiaalwdmdsigeiepdvvfllksdilnlkfhlkilkdrgktvfvdmdfvnglgeg
eeailfvkkagadgiitikpknyvvakkngipavlrffaldskavergieqietlgvdvv
evlpgavapkvarkipgrtviaaglveteeeareilkhvsaistssrilwkm