PDB entry 1vke
View 1vke on RCSB PDB site
Description: Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in antioxidative response (TM1620) from Thermotoga maritima at 1.56 A resolution
Class: lyase
Keywords: TM1620, CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN POSSIBLY INVOLVED IN ANTIOXIDATIVE RESPONSE, STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, Joint Center for Structural Genomics, LYASE
Deposited on
2004-05-13, released
2004-06-08
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 1.56 Å
R-factor: 0.159
AEROSPACI score: 0.66
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: carboxymuconolactone decarboxylase family protein
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM1620
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1vkea_ - Chain 'B':
Compound: carboxymuconolactone decarboxylase family protein
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM1620
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1vkeb_ - Chain 'C':
Compound: carboxymuconolactone decarboxylase family protein
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM1620
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1vkec_ - Chain 'D':
Compound: carboxymuconolactone decarboxylase family protein
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM1620
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1vked_ - Chain 'E':
Compound: carboxymuconolactone decarboxylase family protein
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM1620
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1vkee_ - Chain 'F':
Compound: carboxymuconolactone decarboxylase family protein
Species: THERMOTOGA MARITIMA [TaxId:243274]
Gene: TM1620
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1vkef_ - Heterogens: UNL, MPD, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1vkeA (A:)
mgsdkihhhhhhmeykkfvearrelnekvlsrgtlntkrffnldsavyrpgkldvktkel
mglvastvlrcddciryhlvrcvqegasdeeifealdialvvggsiviphlrravgflee
lremekngetisl
Sequence, based on observed residues (ATOM records): (download)
>1vkeA (A:)
kkfvearrelnekvsrgtlntkrffnldsavyrpgkldvktkelmglvastvlrcddcir
yhlvrcvqegasdeeifealdialvvggsiviphlrravgfleelremekngetisl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1vkeB (B:)
mgsdkihhhhhhmeykkfvearrelnekvlsrgtlntkrffnldsavyrpgkldvktkel
mglvastvlrcddciryhlvrcvqegasdeeifealdialvvggsiviphlrravgflee
lremekngetisl
Sequence, based on observed residues (ATOM records): (download)
>1vkeB (B:)
gtlntkrffnldsavyrpgkldvktkelmglvastvlrcddciryhlvrcvqegasdeei
fealdialvvggsiviphlrravgfleelremekngetisl
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1vkeC (C:)
mgsdkihhhhhhmeykkfvearrelnekvlsrgtlntkrffnldsavyrpgkldvktkel
mglvastvlrcddciryhlvrcvqegasdeeifealdialvvggsiviphlrravgflee
lremekngetisl
Sequence, based on observed residues (ATOM records): (download)
>1vkeC (C:)
gtlntkrffnldsavyrpgkldvktkelmglvastvlrcddciryhlvrcvqegasdeei
fealdialvvggsiviphlrravgfleelremekngetis
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1vkeD (D:)
mgsdkihhhhhhmeykkfvearrelnekvlsrgtlntkrffnldsavyrpgkldvktkel
mglvastvlrcddciryhlvrcvqegasdeeifealdialvvggsiviphlrravgflee
lremekngetisl
Sequence, based on observed residues (ATOM records): (download)
>1vkeD (D:)
srgtlntkrffnldsavyrpgkldvktkelmglvastvlrcddciryhlvrcvqegasde
eifealdialvvggsiviphlrravgfleelremekngeti
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1vkeE (E:)
mgsdkihhhhhhmeykkfvearrelnekvlsrgtlntkrffnldsavyrpgkldvktkel
mglvastvlrcddciryhlvrcvqegasdeeifealdialvvggsiviphlrravgflee
lremekngetisl
Sequence, based on observed residues (ATOM records): (download)
>1vkeE (E:)
eykkfvearrelnekvsrgtlntkrffnldsavyrpgkldvktkelmglvastvlrcddc
iryhlvrcvqegasdeeifealdialvvggsiviphlrravgfleelremekngetisl
- Chain 'F':
Sequence, based on SEQRES records: (download)
>1vkeF (F:)
mgsdkihhhhhhmeykkfvearrelnekvlsrgtlntkrffnldsavyrpgkldvktkel
mglvastvlrcddciryhlvrcvqegasdeeifealdialvvggsiviphlrravgflee
lremekngetisl
Sequence, based on observed residues (ATOM records): (download)
>1vkeF (F:)
rgtlntkrffnldsavyrpgkldvktkelmglvastvlrcddciryhlvrcvqegasdee
ifealdialvvggsiviphlrravgfleelremekng