PDB entry 1vk8

View 1vk8 on RCSB PDB site
Description: Crystal structure of protein with possible role in cell wall biogenesis (TM0486) from Thermotoga maritima at 1.80 A resolution
Class: structural genomics, unknown function
Keywords: TM0486, PROTEIN WITH POSSIBLE ROLE IN CELL WALL BIOGENESIS, STRUCTURAL GENOMICS, JCSG, PSI, Protein Structure Initiative, Joint Center for Structural Genomics
Deposited on 2004-05-05, released 2004-05-18
The last revision prior to the SCOP 1.75 freeze date was dated 2006-03-28, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.144
AEROSPACI score: 0.68 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein TM0486
    Species: Thermotoga maritima
    Gene: TM0486
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WYV6 (Start-105)
      • modified residue (46)
      • modified residue (65)
    Domains in SCOP 1.75: d1vk8a_
  • Chain 'B':
    Compound: hypothetical protein TM0486
    Species: Thermotoga maritima
    Gene: TM0486
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WYV6 (Start-105)
      • modified residue (46)
      • modified residue (65)
    Domains in SCOP 1.75: d1vk8b_
  • Chain 'C':
    Compound: hypothetical protein TM0486
    Species: Thermotoga maritima
    Gene: TM0486
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WYV6 (12-105)
      • modified residue (12)
      • modified residue (46)
      • modified residue (65)
    Domains in SCOP 1.75: d1vk8c_
  • Chain 'D':
    Compound: hypothetical protein TM0486
    Species: Thermotoga maritima
    Gene: TM0486
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WYV6 (Start-105)
      • modified residue (46)
      • modified residue (65)
    Domains in SCOP 1.75: d1vk8d_
  • Heterogens: UNL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vk8A (A:)
mgsdkihhhhhhmpkvtvsikvvpavedgrlhevidraiekisswgmkyevgpsnttveg
efeeimdrvkelaryleqfakrfvlqldidykaggitieekvskyr

    Sequence, based on observed residues (ATOM records): (download) 
    >1vk8A (A:)
pkvtvsikvvpavedgrlhevidraiekisswgmkyevgpsnttvegefeeimdrvkela
ryleqfakrfvlqldidykaggitieekvskyr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vk8B (B:)
mgsdkihhhhhhmpkvtvsikvvpavedgrlhevidraiekisswgmkyevgpsnttveg
efeeimdrvkelaryleqfakrfvlqldidykaggitieekvskyr

    Sequence, based on observed residues (ATOM records): (download) 
    >1vk8B (B:)
pkvtvsikvvpavedgrlhevidraiekisswgmkyevgpsnttvegefeeimdrvkela
ryleqfakrfvlqldidykaggitieekvskyr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1vk8C (C:)
mgsdkihhhhhhmpkvtvsikvvpavedgrlhevidraiekisswgmkyevgpsnttveg
efeeimdrvkelaryleqfakrfvlqldidykaggitieekvskyr

    Sequence, based on observed residues (ATOM records): (download) 
    >1vk8C (C:)
mpkvtvsikvvpavedgrlhevidraiekisswgmkyevgpsnttvegefeeimdrvkel
aryleqfakrfvlqldidykaggitieekvskyr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1vk8D (D:)
mgsdkihhhhhhmpkvtvsikvvpavedgrlhevidraiekisswgmkyevgpsnttveg
efeeimdrvkelaryleqfakrfvlqldidykaggitieekvskyr

    Sequence, based on observed residues (ATOM records): (download) 
    >1vk8D (D:)
pkvtvsikvvpavedgrlhevidraiekisswgmkyevgpsnttvegefeeimdrvkela
ryleqfakrfvlqldidykaggitieekvskyr