PDB entry 1vjm

View 1vjm on RCSB PDB site
Description: Deformation of helix C in the low-temperature L-intermediate of bacteriorhodopsin
Class: transport protein
Keywords: Ion transport, Photoreceptor, Transmembrane, RETINAL protein, Hydrogen ion Transport
Deposited on 2004-03-12, released 2004-04-06
The last revision prior to the SCOP 1.73 freeze date was dated 2005-01-11, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.252
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: bacteriorhodopsin
    Species: Halobacterium sp.
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1vjma_
  • Heterogens: RET, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vjmA (A:)
qaqitgrpewiwlalgtalmglgtlyflvkgmgvsdpdakkfyaittlvpaiaftmylsm
llgygltmvpfggeqnpiywaryadwlfttplllldlallvdadqgtilalvgadgimig
tglvgaltkvysyrfvwwaistaamlyilyvlffgftskaesmrpevastfkvlrnvtvv
lwsaypvvwligsegagivplnietllfmvldvsakvgfglillrsraifgeaeapepsa
gdgaaatsd

    Sequence, based on observed residues (ATOM records): (download) 
    >1vjmA (A:)
tgrpewiwlalgtalmglgtlyflvkgmgvsdpdakkfyaittlvpaiaftmylsmllgy
gltmvpfggeqnpiywaryadwlfttplllldlallvdadqgtilalvgadgimigtglv
galtkvysyrfvwwaistaamlyilyvlffgftskaesmrpevastfkvlrnvtvvlwsa
ypvvwligsegagivplnietllfmvldvsakvgfglillrsraifge