PDB entry 1vi8

View 1vi8 on RCSB PDB site
Description: Crystal structure of a putative thioesterase
Class: Structural genomics, unknown function
Keywords: structural genomics, PSI, Protein Structure Initiative, New York Structural GenomiX Research Consortium, NYSGXRC
Deposited on 2003-12-01, released 2003-12-30
The last revision prior to the SCOP 1.73 freeze date was dated 2005-08-30, with a file datestamp of 2007-07-20.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.241
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hypothetical protein ydiI
    Species: Escherichia coli
    Gene: YDII, B1686
    Database cross-references and differences (RAF-indexed):
    • Uniprot P77781 (3-137)
      • cloning artifact (1-2)
      • cloning artifact (138)
    Domains in SCOP 1.73: d1vi8a_
  • Chain 'B':
    Compound: Hypothetical protein ydiI
    Species: Escherichia coli
    Gene: YDII, B1686
    Database cross-references and differences (RAF-indexed):
    • Uniprot P77781 (3-137)
      • cloning artifact (1-2)
      • cloning artifact (138-146)
    Domains in SCOP 1.73: d1vi8b_
  • Chain 'C':
    Compound: Hypothetical protein ydiI
    Species: Escherichia coli
    Gene: YDII, B1686
    Database cross-references and differences (RAF-indexed):
    • Uniprot P77781 (3-137)
      • cloning artifact (1-2)
      • cloning artifact (138)
    Domains in SCOP 1.73: d1vi8c_
  • Chain 'D':
    Compound: Hypothetical protein ydiI
    Species: Escherichia coli
    Gene: YDII, B1686
    Database cross-references and differences (RAF-indexed):
    • Uniprot P77781 (3-137)
      • cloning artifact (1-2)
      • cloning artifact (138)
    Domains in SCOP 1.73: d1vi8d_
  • Chain 'E':
    Compound: Hypothetical protein ydiI
    Species: Escherichia coli
    Gene: YDII, B1686
    Database cross-references and differences (RAF-indexed):
    • Uniprot P77781 (3-137)
      • cloning artifact (1-2)
      • cloning artifact (138)
    Domains in SCOP 1.73: d1vi8e_
  • Chain 'F':
    Compound: Hypothetical protein ydiI
    Species: Escherichia coli
    Gene: YDII, B1686
    Database cross-references and differences (RAF-indexed):
    • Uniprot P77781 (3-137)
      • cloning artifact (1-2)
      • cloning artifact (138)
    Domains in SCOP 1.73: d1vi8f_
  • Chain 'G':
    Compound: Hypothetical protein ydiI
    Species: Escherichia coli
    Gene: YDII, B1686
    Database cross-references and differences (RAF-indexed):
    • Uniprot P77781 (3-137)
      • cloning artifact (2)
      • cloning artifact (138)
    Domains in SCOP 1.73: d1vi8g_
  • Chain 'H':
    Compound: Hypothetical protein ydiI
    Species: Escherichia coli
    Gene: YDII, B1686
    Database cross-references and differences (RAF-indexed):
    • Uniprot P77781 (3-137)
      • cloning artifact (1-2)
      • cloning artifact (138)
    Domains in SCOP 1.73: d1vi8h_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vi8A (A:)
msliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggas
vvlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqiei
fdekgrlccssrlttaileggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi8A (A:)
sliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasv
vlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieif
dekgrlccssrlttaile

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vi8B (B:)
msliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggas
vvlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqiei
fdekgrlccssrlttaileggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi8B (B:)
sliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasv
vlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieif
dekgrlccssrlttaileggshhhhh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1vi8C (C:)
msliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggas
vvlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqiei
fdekgrlccssrlttaileggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi8C (C:)
sliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasv
vlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieif
dekgrlccssrlttaile

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1vi8D (D:)
msliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggas
vvlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqiei
fdekgrlccssrlttaileggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi8D (D:)
sliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasv
vlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieif
dekgrlccssrlttaile

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1vi8E (E:)
msliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggas
vvlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqiei
fdekgrlccssrlttaileggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi8E (E:)
sliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasv
vlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieif
dekgrlccssrlttaile

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1vi8F (F:)
msliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggas
vvlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqiei
fdekgrlccssrlttaileggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi8F (F:)
sliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasv
vlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieif
dekgrlccssrlttaile

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1vi8G (G:)
msliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggas
vvlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqiei
fdekgrlccssrlttaileggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi8G (G:)
liwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasvv
laesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieifd
ekgrlccssrlttaile

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1vi8H (H:)
msliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggas
vvlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqiei
fdekgrlccssrlttaileggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vi8H (H:)
sliwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasv
vlaesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieif
dekgrlccssrlttaile