PDB entry 1vi5
View 1vi5 on RCSB PDB site
Description: Crystal structure of ribosomal protein S2P
Class: ribosome
Keywords: structural genomics, RIBOSOME
Deposited on
2003-12-01, released
2003-12-30
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.246
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 30S ribosomal protein S2P
Species: Archaeoglobus fulgidus [TaxId:2234]
Gene: RPS2P, AF1133
Database cross-references and differences (RAF-indexed):
- Uniprot O29132 (Start-197)
- modified residue (31)
- modified residue (85)
- modified residue (108)
- cloning artifact (198-202)
Domains in SCOPe 2.06: d1vi5a1, d1vi5a2 - Chain 'B':
Compound: 30S ribosomal protein S2P
Species: Archaeoglobus fulgidus [TaxId:2234]
Gene: RPS2P, AF1133
Database cross-references and differences (RAF-indexed):
- Uniprot O29132 (Start-197)
- modified residue (31)
- modified residue (85)
- modified residue (108)
- cloning artifact (198)
Domains in SCOPe 2.06: d1vi5b1, d1vi5b2 - Chain 'C':
Compound: 30S ribosomal protein S2P
Species: Archaeoglobus fulgidus [TaxId:2234]
Gene: RPS2P, AF1133
Database cross-references and differences (RAF-indexed):
- Uniprot O29132 (Start-197)
- modified residue (31)
- modified residue (85)
- modified residue (108)
- cloning artifact (198)
Domains in SCOPe 2.06: d1vi5c1, d1vi5c2 - Chain 'D':
Compound: 30S ribosomal protein S2P
Species: Archaeoglobus fulgidus [TaxId:2234]
Gene: RPS2P, AF1133
Database cross-references and differences (RAF-indexed):
- Uniprot O29132 (Start-197)
- modified residue (31)
- modified residue (85)
- modified residue (108)
Domains in SCOPe 2.06: d1vi5d_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1vi5A (A:)
mslekeyeylvppddylaagvhigtqiktgdmkkfifkvrqdglyvldirklderirvaa
kflsryepskillvaarqyahkpvqmfskvvgsdyivgrfipgtltnpmlseyrepevvf
vndpaidkqavseatavgipvvalcdsnnssadvdlviptnnkgrralaivywllareia
kirgqdftysiedfeaeleggshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1vi5A (A:)
eyeylvppddylaagvhigtqiktgdmkkfifkvrqdglyvldirklderirvaakflsr
yepskillvaarqyahkpvqmfskvvgsdyivgrfipgtltnpmlseyrepevvfvndpa
idkqavseatavgipvvalcdsnnssadvdlviptnnkgrralaivywllareiakirgq
dftysiedfeaeleggsh
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1vi5B (B:)
mslekeyeylvppddylaagvhigtqiktgdmkkfifkvrqdglyvldirklderirvaa
kflsryepskillvaarqyahkpvqmfskvvgsdyivgrfipgtltnpmlseyrepevvf
vndpaidkqavseatavgipvvalcdsnnssadvdlviptnnkgrralaivywllareia
kirgqdftysiedfeaeleggshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1vi5B (B:)
keyeylvppddylaagvhigtqiktgdmkkfifkvrqdglyvldirklderirvaakfls
ryepskillvaarqyahkpvqmfskvvgsdyivgrfipgtltnpmlseyrepevvfvndp
aidkqavseatavgipvvalcdsnnssadvdlviptnnkgrralaivywllareiakirg
qdftysiedfeaele
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1vi5C (C:)
mslekeyeylvppddylaagvhigtqiktgdmkkfifkvrqdglyvldirklderirvaa
kflsryepskillvaarqyahkpvqmfskvvgsdyivgrfipgtltnpmlseyrepevvf
vndpaidkqavseatavgipvvalcdsnnssadvdlviptnnkgrralaivywllareia
kirgqdftysiedfeaeleggshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1vi5C (C:)
yeylvppddylaagvhigtqiktgdmkkfifkvrqdglyvldirklderirvaakflsry
epskillvaarqyahkpvqmfskvvgsdyivgrfipgtltnpmlseyrepevvfvndpai
dkqavseatavgipvvalcdsnnssadvdlviptnnkgrralaivywllareiakirgqd
ftysiedfeaele
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1vi5D (D:)
mslekeyeylvppddylaagvhigtqiktgdmkkfifkvrqdglyvldirklderirvaa
kflsryepskillvaarqyahkpvqmfskvvgsdyivgrfipgtltnpmlseyrepevvf
vndpaidkqavseatavgipvvalcdsnnssadvdlviptnnkgrralaivywllareia
kirgqdftysiedfeaeleggshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1vi5D (D:)
yeylvppddylaagvhigtqiktgdmkkfifkvrqdglyvldirklderirvaakflsry
epskillvaarqyahkpvqmfskvvgsdyivgrfipgtltnpmlseyrepevvfvndpai
dkqavseatavgipvvalcdsnnssadvdlviptnnkgrralaivywllareiakirgqd
ftysiedfeael