PDB entry 1vh1

View 1vh1 on RCSB PDB site
Description: Crystal structure of CMP-KDO synthetase
Class: Transferase
Keywords: structural genomics, Transferase
Deposited on 2003-12-01, released 2003-12-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.24
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-deoxy-manno-octulosonate cytidylyltransferase
    Species: Escherichia coli [TaxId:562]
    Gene: KDSB, B0918
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04951 (1-End)
      • modified residue (28)
      • modified residue (66)
      • modified residue (102)
      • modified residue (122)
      • modified residue (207)
      • modified residue (246)
    Domains in SCOPe 2.08: d1vh1a_
  • Chain 'B':
    Compound: 3-deoxy-manno-octulosonate cytidylyltransferase
    Species: Escherichia coli [TaxId:562]
    Gene: KDSB, B0918
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04951 (1-End)
      • modified residue (28)
      • modified residue (66)
      • modified residue (102)
      • modified residue (122)
      • modified residue (207)
      • modified residue (246)
    Domains in SCOPe 2.08: d1vh1b_
  • Chain 'C':
    Compound: 3-deoxy-manno-octulosonate cytidylyltransferase
    Species: Escherichia coli [TaxId:562]
    Gene: KDSB, B0918
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04951 (1-End)
      • modified residue (28)
      • modified residue (66)
      • modified residue (102)
      • modified residue (122)
      • modified residue (207)
      • modified residue (246)
    Domains in SCOPe 2.08: d1vh1c_
  • Chain 'D':
    Compound: 3-deoxy-manno-octulosonate cytidylyltransferase
    Species: Escherichia coli [TaxId:562]
    Gene: KDSB, B0918
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04951 (1-End)
      • modified residue (28)
      • modified residue (66)
      • modified residue (102)
      • modified residue (122)
      • modified residue (207)
      • modified residue (246)
    Domains in SCOPe 2.08: d1vh1d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vh1A (A:)
msfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaravea
aggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrq
vgmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflr
hlgiygyragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedl
ervraemrgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vh1A (A:)
sfvviiparyastpgkplvdingkpmivhvleraresgaeriivatdhedvaraveaagg
evcmtrgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrqvgmatlav
pihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflrhlgiygyr
agfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedlervraem

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vh1B (B:)
msfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaravea
aggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrq
vgmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflr
hlgiygyragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedl
ervraemrgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vh1B (B:)
sfvviiparygkplvdingkpmivhvleraresgaeriivatdhedvaraveaaggevcm
traterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrqvgmatlavpihn
aeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflrhlgiygyragfi
rryvnwqpsplehiemleqlrvlwygekihvavaedlervraem

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1vh1C (C:)
msfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaravea
aggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrq
vgmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflr
hlgiygyragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedl
ervraemrgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vh1C (C:)
sfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaraveaa
ggevcmtqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrqvgmat
lavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfavgdnflrhlgiygyrag
firryvnwqpsplehiemleqlrvlwygekihvavaqegvdtpedlervraem

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1vh1D (D:)
msfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaravea
aggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrq
vgmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflr
hlgiygyragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedl
ervraemrgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vh1D (D:)
sfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaraveaa
ggevcmtsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrqvgmatl
avpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflrhlgiyg
yragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedlervrae
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