PDB entry 1vgx

View 1vgx on RCSB PDB site
Description: Crystal structure of a autoinducer-2 synthesis protein
Class: hydrolase
Keywords: structural genomics, HYDROLASE
Deposited on 2003-11-03, released 2003-11-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.171
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: S-ribosylhomocysteinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: LUXS, DR2387
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RRU8
      • modified residue (81)
    Domains in SCOPe 2.06: d1vgxa_
  • Chain 'B':
    Compound: S-ribosylhomocysteinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: LUXS, DR2387
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RRU8
      • modified residue (81)
    Domains in SCOPe 2.06: d1vgxb_
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1vgxA (A:)
    mpdmanvesfdldhtkvkapyvrlagvkttpkgdqiskydlrflqpnqgaidpaaihtle
    hllagymrdhlegvvdvspmgcrtgmymavigepdeqgvmkafeaalkdtaghdqpipgv
    selecgnyrdhdlaaarqhardvldqglkvqetillergshhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1vgxA (A:)
    esfdldhtkvkapyvrlagvkttpkgdqiskydlrflqpnqgaidpaaihtlehllagym
    rdhlegvvdvspmgcrtgmymavigepdeqgvmkafeaalkdtaghdqpipgvselecgn
    yrdhdlaaarqhardvldqglkvqetill
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1vgxB (B:)
    mpdmanvesfdldhtkvkapyvrlagvkttpkgdqiskydlrflqpnqgaidpaaihtle
    hllagymrdhlegvvdvspmgcrtgmymavigepdeqgvmkafeaalkdtaghdqpipgv
    selecgnyrdhdlaaarqhardvldqglkvqetillergshhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1vgxB (B:)
    nvesfdldhtkvkapyvrlagvkttpkgdqiskydlrflqpnqgaidpaaihtlehllag
    ymrdhlegvvdvspmgcrtgmymavigepdeqgvmkafeaalkdtaghdqpipgvselec
    gnyrdhdlaaarqhardvldqglkvqetill