PDB entry 1vgw

View 1vgw on RCSB PDB site
Description: Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Class: transferase
Keywords: structural genomics, TRANSFERASE
Deposited on 2003-11-03, released 2003-11-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-04, with a file datestamp of 2017-09-29.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: ygbP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vgwa_
  • Chain 'B':
    Compound: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: ygbP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vgwb_
  • Chain 'C':
    Compound: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: ygbP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vgwc_
  • Chain 'D':
    Compound: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: ygbP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vgwd_
  • Chain 'E':
    Compound: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: ygbP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vgwe_
  • Chain 'F':
    Compound: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: ygbP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vgwf_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vgwA (A:)
mslkrknialipaagigvrfgadkpkqyveigsktvlehvlgiferheavdltvvvvspe
dtfadkvqtafpqvrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpse
alarlieqagnaaeggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhra
laaenlggitdeasaveklgvrplliqgdarnlkltqpqdayivrllldav

    Sequence, based on observed residues (ATOM records): (download) 
    >1vgwA (A:)
krknialipaapkqyveigsktvlehvlgiferheavdltvvvvspedtfadkvqtafpq
vrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpsealarlieqagnaa
eggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhralaagitdeasave
klgvrplliqgdarnlkltqpqdayivrllld

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vgwB (B:)
mslkrknialipaagigvrfgadkpkqyveigsktvlehvlgiferheavdltvvvvspe
dtfadkvqtafpqvrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpse
alarlieqagnaaeggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhra
laaenlggitdeasaveklgvrplliqgdarnlkltqpqdayivrllldav

    Sequence, based on observed residues (ATOM records): (download) 
    >1vgwB (B:)
lkrknialipaakqyveigsktvlehvlgiferheavdltvvvvspedtfadkvqtafpq
vrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpsealarlieqagnaa
eggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhralaalggitdeasa
veklgvrplliqgdarnlkltqpqdayivrllld

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1vgwC (C:)
mslkrknialipaagigvrfgadkpkqyveigsktvlehvlgiferheavdltvvvvspe
dtfadkvqtafpqvrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpse
alarlieqagnaaeggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhra
laaenlggitdeasaveklgvrplliqgdarnlkltqpqdayivrllldav

    Sequence, based on observed residues (ATOM records): (download) 
    >1vgwC (C:)
slkrknialipaagpkqyveigsktvlehvlgiferheavdltvvvvspedtfadkvqta
fpqvrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpsealarlieqag
naaeggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhralaaitdeasa
veklgvrplliqgdarnlkltqpqdayivrllld

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1vgwD (D:)
mslkrknialipaagigvrfgadkpkqyveigsktvlehvlgiferheavdltvvvvspe
dtfadkvqtafpqvrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpse
alarlieqagnaaeggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhra
laaenlggitdeasaveklgvrplliqgdarnlkltqpqdayivrllldav

    Sequence, based on observed residues (ATOM records): (download) 
    >1vgwD (D:)
rknialipaapkqyveigsktvlehvlgiferheavdltvvvvspedtfadkvqtafpqv
rvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpsealarlieqagnaae
ggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhralaagitdeasavek
lgvrplliqgdarnlkltqpqdayivrllld

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1vgwE (E:)
mslkrknialipaagigvrfgadkpkqyveigsktvlehvlgiferheavdltvvvvspe
dtfadkvqtafpqvrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpse
alarlieqagnaaeggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhra
laaenlggitdeasaveklgvrplliqgdarnlkltqpqdayivrllldav

    Sequence, based on observed residues (ATOM records): (download) 
    >1vgwE (E:)
slkrknialipaagpkqyveigsktvlehvlgiferheavdltvvvvspedtfadkvqta
fpqvrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpsealarlieqag
naaeggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhralaitdeasav
eklgvrplliqgdarnlkltqpqdayivrllld

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1vgwF (F:)
mslkrknialipaagigvrfgadkpkqyveigsktvlehvlgiferheavdltvvvvspe
dtfadkvqtafpqvrvwknggqtraetvrngvaklletglaaetdnilvhdaarcclpse
alarlieqagnaaeggilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhra
laaenlggitdeasaveklgvrplliqgdarnlkltqpqdayivrllldav

    Sequence, based on observed residues (ATOM records): (download) 
    >1vgwF (F:)
krknialipaaqyveigsktvlehvlgiferheavdltvvvvspedtfadkvqtafpqvr
vwknggqtraetvrngvaklletglaaetdnilvhdaarcclpsealarlieqagnaaeg
gilavpvadtlkraesgqisatvdrsglwqaqtpqlfqagllhralagitdeasaveklg
vrplliqgdarnlkltqpqdayivrllld