PDB entry 1vgk
View 1vgk on RCSB PDB site
Description: The crystal structure of class I Major histocompatibility complex, H-2Kd at 2.0 A resolution
Class: immune system
Keywords: MHC, H-2Kd, crystal structure, class I, IMMUNE SYSTEM
Deposited on
2004-04-27, released
2005-06-28
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.06 Å
R-factor: 0.19
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: H-2 class I histocompatibility antigen, K-D alpha chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1vgka1, d1vgka2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1vgkb_ - Chain 'C':
Compound: syvntnmgl
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1vgkA (A:)
gphslryfvtavsrpglgeprfiavgyvddtqfvrfdsdadnprfeprapwmeqegpeyw
eeqtqraksdeqwfrvslrtaqryynqskggshtfqrmfgcdvgsdwrllrgyqqfaydg
rdyialnedlktwtaadtaalitrrkweqagdaeyyraylegecvewlrrylelgnetll
rtdspkahvtyhprsqvdvtlrcwalgfypaditltwqlngedltqdmelvetrpagdgt
fqkwaavvvplgkeqnytchvhhkglpepltlrw
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1vgkB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.