PDB entry 1vfs

View 1vfs on RCSB PDB site
Description: Crystal structure of D-cycloserine-bound form of alanine racemase from D-cycloserine-producing Streptomyces lavendulae
Class: isomerase
Keywords: TIM-barrel, Greek-key motief, ISOMERASE
Deposited on 2004-04-19, released 2004-09-14
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.209
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alanine racemase
    Species: Streptomyces lavendulae [TaxId:1914]
    Gene: alr
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1vfsa1, d1vfsa2, d1vfsa3
  • Chain 'B':
    Compound: alanine racemase
    Species: Streptomyces lavendulae [TaxId:1914]
    Gene: alr
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1vfsb1, d1vfsb2, d1vfsb3
  • Heterogens: CL, DCS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vfsA (A:)
mnetptrvyaeidldavranvralraraprsalmavvksnayghgavpcaraaqeagaaw
lgtatpeealelraagiqgrimcwlwtpggpwreaietdidvsvsgmwaldevraaaraa
grtariqlkadtglgrngcqpadwaelvgaavaaqaegtvqvtgvwshfacadepghpsi
rlqldafrdmlayaekegvdpevrhianspatltlpethfdlvrtglavygvspspelgt
paqlglrpamtlraslalvktvpaghgvsyghhyvtesethlalvpagyadgiprnasgr
gpvlvagkirraagriamdqfvvdlgedlaeagdeavilgdaergeptaedwaqaahtia
yeivtriggrvprvylgglehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vfsA (A:)
etptrvyaeidldavranvralraraprsalmavvksnayghgavpcaraaqeagaawlg
tatpeealelraagiqgrimcwlwtpggpwreaietdidvsvsgmwaldevraaaraagr
tariqlkadtglgrngcqpadwaelvgaavaaqaegtvqvtgvwshfacadepghpsirl
qldafrdmlayaekegvdpevrhianspatltlpethfdlvrtglavygvspspelgtpa
qlglrpamtlraslalvktvpaghgvsyghhyvtesethlalvpagyadgiprnasgrgp
vlvagkirraagriamdqfvvdlgedlaeagdeavilgdaergeptaedwaqaahtiaye
ivtriggrvprvylgglehhhhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vfsB (B:)
mnetptrvyaeidldavranvralraraprsalmavvksnayghgavpcaraaqeagaaw
lgtatpeealelraagiqgrimcwlwtpggpwreaietdidvsvsgmwaldevraaaraa
grtariqlkadtglgrngcqpadwaelvgaavaaqaegtvqvtgvwshfacadepghpsi
rlqldafrdmlayaekegvdpevrhianspatltlpethfdlvrtglavygvspspelgt
paqlglrpamtlraslalvktvpaghgvsyghhyvtesethlalvpagyadgiprnasgr
gpvlvagkirraagriamdqfvvdlgedlaeagdeavilgdaergeptaedwaqaahtia
yeivtriggrvprvylgglehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1vfsB (B:)
etptrvyaeidldavranvralraraprsalmavvksnayghgavpcaraaqeagaawlg
tatpeealelraagiqgrimcwlwtpggpwreaietdidvsvsgmwaldevraaaraagr
tariqlkadtglgrngcqpadwaelvgaavaaqaegtvqvtgvwshfacadepghpsirl
qldafrdmlayaekegvdpevrhianspatltlpethfdlvrtglavygvspspelgtpa
qlglrpamtlraslalvktvpaghgvsyghhyvtesethlalvpagyadgiprnasgrgp
vlvagkirraagriamdqfvvdlgedlaeagdeavilgdaergeptaedwaqaahtiaye
ivtriggrvprvylgglehhhh