PDB entry 1vdv

View 1vdv on RCSB PDB site
Description: Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
Class: oxidoreductase
Keywords: xanthine oxidoreductase, Y-700, inhibitor
Deposited on 2004-03-25, released 2004-12-21
The last revision prior to the SCOP 1.75 freeze date was dated 2004-12-21, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: 0.178
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Xanthine dehydrogenase/oxidase
    Species: BOS TAURUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1vdva1, d1vdva2, d1vdva3, d1vdva4, d1vdva5, d1vdva6
  • Chain 'B':
    Compound: Xanthine dehydrogenase/oxidase
    Species: BOS TAURUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1vdvb1, d1vdvb2, d1vdvb3, d1vdvb4, d1vdvb5, d1vdvb6
  • Heterogens: CA, FES, MTE, MOS, FAD, YSH, GOL, ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1vdvA (A:)
    mtadelvffvngkkvveknadpettllaylrrklglrgtklgcgeggcgactvmlskydr
    lqdkiihfsanaclapictlhhvavttvegigstktrlhpvqeriakshgsqcgfctpgi
    vmsmytllrnqpeptveeiedafqgnlcrctgyrpilqgfrtfaknggccggngnnpncc
    mnqkkdhtvtlspslfnpeefmpldptqepifppellrlkdvppkqlrfegervtwiqas
    tlkelldlkaqhpeaklvvgnteigiemkfknqlfpmiicpawipelnavehgpegisfg
    aacalssvektlleavaklptqktevfrgvleqlrwfagkqvksvaslggniitaspisd
    lnpvfmasgtkltivsrgtrrtvpmdhtffpsyrktllgpeeillsieipysredeffsa
    fkqasrreddiakvtcgmrvlfqpgsmqvkelalcyggmadrtisalkttqkqlskfwne
    kllqdvcaglaeelslspdapggmiefrrtltlsfffkfyltvlkklgkdskdkcgkldp
    tytsatllfqkhppaniqlfqevpngqskedtvgrplphlaaamqasgeavycddiprye
    nelflrlvtstrahakiksidvseaqkvpgfvcflsaddipgsnetglfndetvfakdtv
    tcvghiigavvadtpehaeraahvvkvtyedlpaiitiedaiknnsfygselkiekgdlk
    kgfseadnvvsgelyiggqdhfylethctiaipkgeegemelfvstqnamktqsfvakml
    gvpvnrilvrvkrmgggfggketrstlvsvavalaayktghpvrcmldrnedmlitggrh
    pflarykvgfmktgtivalevdhysnagnsrdlshsimeralfhmdncykipnirgtgrl
    cktnlssntafrgfggpqalfiaenwmsevavtcglpaeevrwknmykegdlthfnqrle
    gfsvprcwdeclkssqyyarksevdkfnkencwkkrglciiptkfgisftvpflnqagal
    ihvytdgsvlvshggtemgqglhtkmvqvaskalkipiskiyisetstntvpnssptaas
    vstdiygqavyeacqtilkrlepfkkknpdgswedwvmaayqdrvslsttgfyrtpnlgy
    sfetnsgnafhyftygvacseveidcltgdhknlrtdivmdvgsslnpaidigqvegafv
    qglglftleelhyspegslhtrgpstykipafgsiptefrvsllrdcpnkkaiyaskavg
    epplflgasvffaikdairaaraqhtnnntkelfrldspatpekirnacvdkfttlcvtg
    apgnckpwslrv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1vdvA (A:)
    adelvffvngkkvveknadpettllaylrrklglrgtklgcgeggcgactvmlskydrlq
    dkiihfsanaclapictlhhvavttvegigstktrlhpvqeriakshgsqcgfctpgivm
    smytllrnqpeptveeiedafqgnlcrctgyrpilqgfrtfakspslfnpeefmpldptq
    epifppellrlkdvppkqlrfegervtwiqastlkelldlkaqhpeaklvvgnteigiem
    kfknqlfpmiicpawipelnavehgpegisfgaacalssvektlleavaklptqktevfr
    gvleqlrwfagkqvksvaslggniitaspisdlnpvfmasgtkltivsrgtrrtvpmdht
    ffpsyrktllgpeeillsieipysredeffsafkqasrreddiakvtcgmrvlfqpgsmq
    vkelalcyggmadrtisalkttqkqlskfwnekllqdvcaglaeelslspdapggmiefr
    rtltlsfffkfyltvlkklgkdskldptytsatllfqkhppaniqlfqevpngqskedtv
    grplphlaaamqasgeavycddipryenelflrlvtstrahakiksidvseaqkvpgfvc
    flsaddipgsnetglfndetvfakdtvtcvghiigavvadtpehaeraahvvkvtyedlp
    aiitiedaiknnsfygselkiekgdlkkgfseadnvvsgelyiggqdhfylethctiaip
    kgeegemelfvstqnamktqsfvakmlgvpvnrilvrvkrmgggfggketrstlvsvava
    laayktghpvrcmldrnedmlitggrhpflarykvgfmktgtivalevdhysnagnsrdl
    shsimeralfhmdncykipnirgtgrlcktnlssntafrgfggpqalfiaenwmsevavt
    cglpaeevrwknmykegdlthfnqrlegfsvprcwdeclkssqyyarksevdkfnkencw
    kkrglciiptkfgisftvpflnqagalihvytdgsvlvshggtemgqglhtkmvqvaska
    lkipiskiyisetstntvpnssptaasvstdiygqavyeacqtilkrlepfkkknpdgsw
    edwvmaayqdrvslsttgfyrtpnlgysfetnsgnafhyftygvacseveidcltgdhkn
    lrtdivmdvgsslnpaidigqvegafvqglglftleelhyspegslhtrgpstykipafg
    siptefrvsllrdcpnkkaiyaskavgepplflgasvffaikdairaaraqhtnnntkel
    frldspatpekirnacvdkfttlcvtgapgnckpwslrv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1vdvB (B:)
    mtadelvffvngkkvveknadpettllaylrrklglrgtklgcgeggcgactvmlskydr
    lqdkiihfsanaclapictlhhvavttvegigstktrlhpvqeriakshgsqcgfctpgi
    vmsmytllrnqpeptveeiedafqgnlcrctgyrpilqgfrtfaknggccggngnnpncc
    mnqkkdhtvtlspslfnpeefmpldptqepifppellrlkdvppkqlrfegervtwiqas
    tlkelldlkaqhpeaklvvgnteigiemkfknqlfpmiicpawipelnavehgpegisfg
    aacalssvektlleavaklptqktevfrgvleqlrwfagkqvksvaslggniitaspisd
    lnpvfmasgtkltivsrgtrrtvpmdhtffpsyrktllgpeeillsieipysredeffsa
    fkqasrreddiakvtcgmrvlfqpgsmqvkelalcyggmadrtisalkttqkqlskfwne
    kllqdvcaglaeelslspdapggmiefrrtltlsfffkfyltvlkklgkdskdkcgkldp
    tytsatllfqkhppaniqlfqevpngqskedtvgrplphlaaamqasgeavycddiprye
    nelflrlvtstrahakiksidvseaqkvpgfvcflsaddipgsnetglfndetvfakdtv
    tcvghiigavvadtpehaeraahvvkvtyedlpaiitiedaiknnsfygselkiekgdlk
    kgfseadnvvsgelyiggqdhfylethctiaipkgeegemelfvstqnamktqsfvakml
    gvpvnrilvrvkrmgggfggketrstlvsvavalaayktghpvrcmldrnedmlitggrh
    pflarykvgfmktgtivalevdhysnagnsrdlshsimeralfhmdncykipnirgtgrl
    cktnlssntafrgfggpqalfiaenwmsevavtcglpaeevrwknmykegdlthfnqrle
    gfsvprcwdeclkssqyyarksevdkfnkencwkkrglciiptkfgisftvpflnqagal
    ihvytdgsvlvshggtemgqglhtkmvqvaskalkipiskiyisetstntvpnssptaas
    vstdiygqavyeacqtilkrlepfkkknpdgswedwvmaayqdrvslsttgfyrtpnlgy
    sfetnsgnafhyftygvacseveidcltgdhknlrtdivmdvgsslnpaidigqvegafv
    qglglftleelhyspegslhtrgpstykipafgsiptefrvsllrdcpnkkaiyaskavg
    epplflgasvffaikdairaaraqhtnnntkelfrldspatpekirnacvdkfttlcvtg
    apgnckpwslrv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1vdvB (B:)
    adelvffvngkkvveknadpettllaylrrklglrgtklgcgeggcgactvmlskydrlq
    dkiihfsanaclapictlhhvavttvegigstktrlhpvqeriakshgsqcgfctpgivm
    smytllrnqpeptveeiedafqgnlcrctgyrpilqgfrtfakspslfnpeefmpldptq
    epifppellrlkdvppkqlrfegervtwiqastlkelldlkaqhpeaklvvgnteigiem
    kfknqlfpmiicpawipelnavehgpegisfgaacalssvektlleavaklptqktevfr
    gvleqlrwfagkqvksvaslggniitaspisdlnpvfmasgtkltivsrgtrrtvpmdht
    ffpsyrktllgpeeillsieipysredeffsafkqasrreddiakvtcgmrvlfqpgsmq
    vkelalcyggmadrtisalkttqkqlskfwnekllqdvcaglaeelslspdapggmiefr
    rtltlsfffkfyltvlkklgkldptytsatllfqkhppaniqlfqevpngqskedtvgrp
    lphlaaamqasgeavycddipryenelflrlvtstrahakiksidvseaqkvpgfvcfls
    addipgsnetglfndetvfakdtvtcvghiigavvadtpehaeraahvvkvtyedlpaii
    tiedaiknnsfygselkiekgdlkkgfseadnvvsgelyiggqdhfylethctiaipkge
    egemelfvstqnamktqsfvakmlgvpvnrilvrvkrmgggfggketrstlvsvavalaa
    yktghpvrcmldrnedmlitggrhpflarykvgfmktgtivalevdhysnagnsrdlshs
    imeralfhmdncykipnirgtgrlcktnlssntafrgfggpqalfiaenwmsevavtcgl
    paeevrwknmykegdlthfnqrlegfsvprcwdeclkssqyyarksevdkfnkencwkkr
    glciiptkfgisftvpflnqagalihvytdgsvlvshggtemgqglhtkmvqvaskalki
    piskiyisetstntvpnssptaasvstdiygqavyeacqtilkrlepfkkknpdgswedw
    vmaayqdrvslsttgfyrtpnlgysfetnsgnafhyftygvacseveidcltgdhknlrt
    divmdvgsslnpaidigqvegafvqglglftleelhyspegslhtrgpstykipafgsip
    tefrvsllrdcpnkkaiyaskavgepplflgasvffaikdairaaraqhtnnntkelfrl
    dspatpekirnacvdkfttlcvtgapgnckpwslrv