PDB entry 1vdk

View 1vdk on RCSB PDB site
Description: Crystal structure of fumarase from thermus thermophilus HB8
Class: lyase
Keywords: fumarase, TCA cycle, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, LYASE
Deposited on 2004-03-23, released 2004-04-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.185
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fumarate hydratase class II
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vdka_
  • Chain 'B':
    Compound: fumarate hydratase class II
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vdkb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vdkA (A:)
meyrierdtmgevrvpadkywgaqtqrslenfrigtdrfrmpleiiraygmlkkaaaran
lelgelpeeiakaiiqaaeevvqgkwddhfplvvfqtgsgtqtnmnvnevianraseilg
kplgskyahpndhvnrgqssndtfptamyvavalalhqrlypaveglirtftakaqafdq
ivkvgrthlmdavpitlgqeigswaaqlkttlaavkemekglynlaiggtavgtglnahp
rfgelvakylaeetglpfrvaenrfaalaahdelvnvmgairtlagalmkigndvrwlas
gpyagigeitipanepgssimpgkvnptqvealtmvvvrvygndhtvafagsqgnfqlnv
ykpvmaystlesinlladavasfdahlaqgiepnlerieeylqknpmlatalnkaigydk
aaeivkkalkekktlkqaalelgylteeefdrivvpmrlakphega

    Sequence, based on observed residues (ATOM records): (download) 
    >1vdkA (A:)
rierdtmgevrvpadkywgaqtqrslenfrigtdrfrmpleiiraygmlkkaaaranlel
gelpeeiakaiiqaaeevvqgkwddhfplvvfqtgsgtqtnmnvnevianraseilgkpl
gskyahpndhvnrgqssndtfptamyvavalalhqrlypaveglirtftakaqafdqivk
vgrthlmdavpitlgqeigswaaqlkttlaavkemekglynlaiggtavgtglnahprfg
elvakylaeetglpfrvaenrfaalaahdelvnvmgairtlagalmkigndvrwlasgpy
agigeitipanepgssimpgkvnptqvealtmvvvrvygndhtvafagsqgnfqlnvykp
vmaystlesinlladavasfdahlaqgiepnlerieeylqknpmlatalnkaigydkaae
ivkkalkktlkqaalelgylteeefdrivvpmrlakph

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vdkB (B:)
meyrierdtmgevrvpadkywgaqtqrslenfrigtdrfrmpleiiraygmlkkaaaran
lelgelpeeiakaiiqaaeevvqgkwddhfplvvfqtgsgtqtnmnvnevianraseilg
kplgskyahpndhvnrgqssndtfptamyvavalalhqrlypaveglirtftakaqafdq
ivkvgrthlmdavpitlgqeigswaaqlkttlaavkemekglynlaiggtavgtglnahp
rfgelvakylaeetglpfrvaenrfaalaahdelvnvmgairtlagalmkigndvrwlas
gpyagigeitipanepgssimpgkvnptqvealtmvvvrvygndhtvafagsqgnfqlnv
ykpvmaystlesinlladavasfdahlaqgiepnlerieeylqknpmlatalnkaigydk
aaeivkkalkekktlkqaalelgylteeefdrivvpmrlakphega

    Sequence, based on observed residues (ATOM records): (download) 
    >1vdkB (B:)
rierdtmgevrvpadkywgaqtqrslenfrigtdrfrmpleiiraygmlkkaaaranlel
gelpeeiakaiiqaaeevvqgkwddhfplvvfqtgsgtqtnmnvnevianraseilgkpl
gskyahpndhvnrgqssndtfptamyvavalalhqrlypaveglirtftakaqafdqivk
vgrthlmdavpitlgqeigswaaqlkttlaavkemekglynlaiggtavgtglnahprfg
elvakylaeetglpfrvaenrfaalaahdelvnvmgairtlagalmkigndvrwlasgpy
agigeitipanepimpgkvnptqvealtmvvvrvygndhtvafagsqgnfqlnvykpvma
ystlesinlladavasfdahlaqgiepnlerieeylqknpmlatalnkaigydkaaeivk
kalkekktlkqaalelgylteeefdrivvpmrlakph