PDB entry 1vde

View 1vde on RCSB PDB site
Description: pi-scei, a homing endonuclease with protein splicing activity
Class: endonuclease
Keywords: homing endonuclease, protein splicing
Deposited on 1997-04-01, released 1998-04-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.192
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: pi-scei
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vdea1, d1vdea2, d1vdea3
  • Chain 'B':
    Compound: pi-scei
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1vdeb1, d1vdeb2, d1vdeb3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vdeA (A:)
cfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksqhrahk
sdssrevpellkftcnathelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgriv
elvkevsksypisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtya
pilyendhffdymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervt
eyaeklnlcaeykdrkepqvaktvnlyskvvrgngirnnlntenplwdaivglgflkdgv
knipsflstdnigtretflaglidsdgyvtdehgikatiktihtsvrdglvslarslglv
vsvnaepakvdmngtkhkisyaiymsggdvllnvlskcagskkfrpapaaafarecrgfy
felqelkeddyygitlsddsdhqfllanqvvvhn

    Sequence, based on observed residues (ATOM records): (download) 
    >1vdeA (A:)
cfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksqhrahk
sdssrevpellkftcnathelvvrtprsvrrlevitfemgqkkapdgrivelvkevsksy
pisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtyapilyendhff
dymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervteyaeklnlca
eykdrkepqvaktvnlyskvlntenplwdaivglgflkdgvknipsflstdnigtretfl
aglidsdgyvtdehgikatiktihtsvrdglvslarslglvvsvnaepatkhkisyaiym
sggdvllnvlskcagskkfrpapaaafarecrgfyfelqelkeddyygitlsddsdhqfl
lanqvvvhn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vdeB (B:)
cfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksqhrahk
sdssrevpellkftcnathelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgriv
elvkevsksypisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtya
pilyendhffdymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervt
eyaeklnlcaeykdrkepqvaktvnlyskvvrgngirnnlntenplwdaivglgflkdgv
knipsflstdnigtretflaglidsdgyvtdehgikatiktihtsvrdglvslarslglv
vsvnaepakvdmngtkhkisyaiymsggdvllnvlskcagskkfrpapaaafarecrgfy
felqelkeddyygitlsddsdhqfllanqvvvhn

    Sequence, based on observed residues (ATOM records): (download) 
    >1vdeB (B:)
cfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksqhrahk
sdssrevpellkftcnathelvvrtprsvrrlevitfemgqkkapdgrivelvkevsksy
pisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtyapilyendhff
dymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervteyaeklnlca
eykdrkepqvaktvnlysklntenplwdaivglgflkdgvknipsflstdnigtretfla
glidsdgyvtdehgikatiktihtsvrdglvslarslglvvsvnaepatkhkisyaiyms
ggdvllnvlskcagskkfrpapaaafarecrgfyfelqelkeddyygitlsddsdhqfll
anqvvvhn