PDB entry 1vcg

View 1vcg on RCSB PDB site
Description: Crystal Structure of IPP isomerase at P43212
Class: isomerase
Keywords: TIM barrel, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics
Deposited on 2004-03-08, released 2005-04-19
The last revision prior to the SCOP 1.73 freeze date was dated 2005-04-19, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.02 Å
R-factor: 0.24
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q746I8 (Start-331)
      • modified residue (65)
      • modified residue (90-91)
      • modified residue (142)
      • modified residue (184)
    Domains in SCOP 1.73: d1vcga1
  • Chain 'B':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q746I8 (Start-331)
      • modified residue (65)
      • modified residue (90-91)
      • modified residue (142)
      • modified residue (184)
    Domains in SCOP 1.73: d1vcgb1
  • Chain 'C':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q746I8 (Start-331)
      • modified residue (65)
      • modified residue (90-91)
      • modified residue (142)
      • modified residue (184)
    Domains in SCOP 1.73: d1vcgc1
  • Chain 'D':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q746I8 (Start-331)
      • modified residue (65)
      • modified residue (90-91)
      • modified residue (142)
      • modified residue (184)
    Domains in SCOP 1.73: d1vcgd1
  • Heterogens: FMN

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1vcgA (A:)
mnirerkrkhleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkap
fligamtggeengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkall
ianlglaqlrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellpl
pfpvmvkevghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceig
iptarailevrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaerva
awigdyleelrtalfaigarnpkeargrverv

    Sequence, based on observed residues (ATOM records): (download) 
    >1vcgA (A:)
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpvrkvapkallianlglaqlrrygrddllrlv
emleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsreaalal
rdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevlphlplva
sggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtalfaigarn
pkeargrverv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1vcgB (B:)
mnirerkrkhleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkap
fligamtggeengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkall
ianlglaqlrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellpl
pfpvmvkevghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceig
iptarailevrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaerva
awigdyleelrtalfaigarnpkeargrverv

    Sequence, based on observed residues (ATOM records): (download) 
    >1vcgB (B:)
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkallianlglaqlrrygr
ddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghgls
reaalalrdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevl
phlplvasggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtal
faigarnpkeargrverv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1vcgC (C:)
mnirerkrkhleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkap
fligamtggeengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkall
ianlglaqlrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellpl
pfpvmvkevghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceig
iptarailevrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaerva
awigdyleelrtalfaigarnpkeargrverv

    Sequence, based on observed residues (ATOM records): (download) 
    >1vcgC (C:)
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpealrrvrkvapkallianlglaqlrrygrdd
llrlvemleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsre
aalalrdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevlph
lplvasggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtalfa
igarnpkeargrverv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1vcgD (D:)
mnirerkrkhleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkap
fligamtggeengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkall
ianlglaqlrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellpl
pfpvmvkevghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceig
iptarailevrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaerva
awigdyleelrtalfaigarnpkeargrverv

    Sequence, based on observed residues (ATOM records): (download) 
    >1vcgD (D:)
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpvrkvapkallianlglaqlrrygrddllrlv
emleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsreaalal
rdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevlphlplva
sggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtalfaigarn
pkeargrverv