PDB entry 1vbf
View 1vbf on RCSB PDB site
Description: Crystal structure of protein L-isoaspartate O-methyltransferase homologue from Sulfolobus tokodaii
Class: transferase
Keywords: trimeric coiled coil assembly, inter-subunit disulfide bridge, protein repair enzyme, TRANSFERASE
Deposited on
2004-02-25, released
2004-08-10
The last revision prior to the SCOPe 2.01 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.205
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 231aa long hypothetical protein-L-isoaspartate O-methyltransferase
Species: Sulfolobus tokodaii [TaxId:111955]
Gene: ST1123
Database cross-references and differences (RAF-indexed):
- Uniprot Q972K9 (0-End)
- see remark 999 (0)
- modified residue (61)
- modified residue (103)
- modified residue (160)
- modified residue (191)
Domains in SCOPe 2.01: d1vbfa_ - Chain 'B':
Compound: 231aa long hypothetical protein-L-isoaspartate O-methyltransferase
Species: Sulfolobus tokodaii [TaxId:111955]
Gene: ST1123
Database cross-references and differences (RAF-indexed):
- Uniprot Q972K9 (0-End)
- see remark 999 (0)
- modified residue (61)
- modified residue (103)
- modified residue (160)
- modified residue (191)
Domains in SCOPe 2.01: d1vbfb_ - Chain 'C':
Compound: 231aa long hypothetical protein-L-isoaspartate O-methyltransferase
Species: Sulfolobus tokodaii [TaxId:111955]
Gene: ST1123
Database cross-references and differences (RAF-indexed):
- Uniprot Q972K9 (0-End)
- see remark 999 (0)
- modified residue (61)
- modified residue (103)
- modified residue (160)
- modified residue (191)
Domains in SCOPe 2.01: d1vbfc_ - Chain 'D':
Compound: 231aa long hypothetical protein-L-isoaspartate O-methyltransferase
Species: Sulfolobus tokodaii [TaxId:111955]
Gene: ST1123
Database cross-references and differences (RAF-indexed):
- Uniprot Q972K9 (0-End)
- see remark 999 (0)
- modified residue (61)
- modified residue (103)
- modified residue (160)
- modified residue (191)
Domains in SCOPe 2.01: d1vbfd_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1vbfA (A:)
asekeeilrkiktqelaeafnkvdrslflpenlkdyayahthealpilpginttalnlgi
fmldeldlhkgqkvleigtgigyytaliaeivdkvvsveinekmynyaskllsyynnikl
ilgdgtlgyeeekpydrvvvwataptllckpyeqlkeggimilpigvgrvqklykvikkg
nspslenlgevmfgrigglygfyddyddiefrvnklerqiksildnlvkkt
Sequence, based on observed residues (ATOM records): (download)
>1vbfA (A:)
asekeeilrkiktqelaeafnkvdrslflpenlkdyayahthealpilpginttalnlgi
fmldeldlhkgqkvleigtgigyytaliaeivdkvvsveinekmynyaskllsyynnikl
ilgdgtlgyeeekpydrvvvwataptllckpyeqlkeggimilpigvgrvqklykvikkg
nspslenlgevmfgrigglygfyddyddiefrvnklerqiksil
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1vbfB (B:)
asekeeilrkiktqelaeafnkvdrslflpenlkdyayahthealpilpginttalnlgi
fmldeldlhkgqkvleigtgigyytaliaeivdkvvsveinekmynyaskllsyynnikl
ilgdgtlgyeeekpydrvvvwataptllckpyeqlkeggimilpigvgrvqklykvikkg
nspslenlgevmfgrigglygfyddyddiefrvnklerqiksildnlvkkt
Sequence, based on observed residues (ATOM records): (download)
>1vbfB (B:)
asekeeilrkiktqelaeafnkvdrslflpenlkdyayahthealpilpginttalnlgi
fmldeldlhkgqkvleigtgigyytaliaeivdkvvsveinekmynyaskllsyynnikl
ilgdgtlgyeeekpydrvvvwataptllckpyeqlkeggimilpigvgrvqklykvikkg
nspslenlgevmfgrigglygfyddyddiefrvnklerqiksildn
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1vbfC (C:)
asekeeilrkiktqelaeafnkvdrslflpenlkdyayahthealpilpginttalnlgi
fmldeldlhkgqkvleigtgigyytaliaeivdkvvsveinekmynyaskllsyynnikl
ilgdgtlgyeeekpydrvvvwataptllckpyeqlkeggimilpigvgrvqklykvikkg
nspslenlgevmfgrigglygfyddyddiefrvnklerqiksildnlvkkt
Sequence, based on observed residues (ATOM records): (download)
>1vbfC (C:)
asekeeilrkiktqelaeafnkvdrslflpenlkdyayahthealpilpginttalnlgi
fmldeldlhkgqkvleigtgigyytaliaeivdkvvsveinekmynyaskllsyynnikl
ilgdgtlgyeeekpydrvvvwataptllckpyeqlkeggimilpigvgrvqklykvikkg
nspslenlgevmfgrigglygfyddyddiefrvnklerqiksil
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1vbfD (D:)
asekeeilrkiktqelaeafnkvdrslflpenlkdyayahthealpilpginttalnlgi
fmldeldlhkgqkvleigtgigyytaliaeivdkvvsveinekmynyaskllsyynnikl
ilgdgtlgyeeekpydrvvvwataptllckpyeqlkeggimilpigvgrvqklykvikkg
nspslenlgevmfgrigglygfyddyddiefrvnklerqiksildnlvkkt
Sequence, based on observed residues (ATOM records): (download)
>1vbfD (D:)
asekeeilrkiktqelaeafnkvdrslflpenlkdyayahthealpilpginttalnlgi
fmldeldlhkgqkvleigtgigyytaliaeivdkvvsveinekmynyaskllsyynnikl
ilgdgtlgyeeekpydrvvvwataptllckpyeqlkeggimilpigvgrvqklykvikkg
nspslenlgevmfgrigglygfyddyddiefrvnklerqiksil