PDB entry 1vbd

View 1vbd on RCSB PDB site
Description: poliovirus (type 1, mahoney strain) complexed with r78206
Class: virus
Keywords: VIRUS COAT PROTEIN, HYDROLASE, THIOL PROTEASE, Icosahedral virus, Virus
Deposited on 1996-01-02, released 1996-07-11
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-29, with a file datestamp of 2017-11-24.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: poliovirus type 1 mahoney
    Species: Human poliovirus 1 [TaxId:12081]
    Database cross-references and differences (RAF-indexed):
    • PDB 1VBD (0-4)
  • Chain '1':
    Compound: poliovirus type 1 mahoney
    Species: Human poliovirus 1 [TaxId:12081]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1vbd1_
  • Chain '2':
    Compound: poliovirus type 1 mahoney
    Species: Human poliovirus 1 [TaxId:12081]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1vbd.1
  • Chain '3':
    Compound: poliovirus type 1 mahoney
    Species: Human poliovirus 1 [TaxId:12081]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03300 (0-End)
      • conflict (122)
    Domains in SCOPe 2.07: d1vbd3_
  • Chain '4':
    Compound: poliovirus type 1 mahoney
    Species: Human poliovirus 1 [TaxId:12081]
    Database cross-references and differences (RAF-indexed):
    • PDB 1VBD (0-67)
    Domains in SCOPe 2.07: d1vbd.1
  • Heterogens: J78, MYR

PDB Chain Sequences:

  • Chain '0':
    No sequence available.

  • Chain '1':
    Sequence, based on SEQRES records: (download)
    >1vbd1 (1:)
    glgqmlesmidntvretvgaatsrdalpnteasgpthskeipaltavetgatnplvpsdt
    vqtrhvvqhrsrsessiesffargacvtimtvdnpasttnkdklfavwkitykdtvqlrr
    klefftysrfdmeltfvvtanftetnnghalnqvyqimyvppgapvpekwddytwqtssn
    psifytygtaparisvpyvgisnayshfydgfskvplkdqsaalgdslygaaslndfgil
    avrvvndhnptkvtskirvylkpkhirvwcprppravayygpgvdykdgtltplstkdlt
    ty
    

    Sequence, based on observed residues (ATOM records): (download)
    >1vbd1 (1:)
    aatsrdalpnteasgpthskeipaltavetgatnplvpsdtvqtrhvvqhrsrsessies
    ffargacvtimtvdnpasttnkdklfavwkitykdtvqlrrklefftysrfdmeltfvvt
    anftetnnghalnqvyqimyvppgapvpekwddytwqtssnpsifytygtaparisvpyv
    gisnayshfydgfskvplkdqsaalgdslygaaslndfgilavrvvndhnptkvtskirv
    ylkpkhirvwcprppravayygpgvdykdgtltplstkdltty
    

  • Chain '2':
    Sequence, based on SEQRES records: (download)
    >1vbd2 (2:)
    spnieacgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdqptepdvaa
    crfytldtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqcnaskfhqg
    algvfavpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtsparrfcpvdyl
    lgngtllgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiailplaplnfa
    sesspeipitltiapmccefnglrnitlprlq
    

    Sequence, based on observed residues (ATOM records): (download)
    >1vbd2 (2:)
    cgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdqptepdvaacrfytl
    dtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqcnaskfhqgalgvfa
    vpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtsparrfcpvdyllgngtl
    lgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiailplaplnfasesspe
    ipitltiapmccefnglrnitlprlq
    

  • Chain '3':
    Sequence, based on SEQRES records: (download)
    >1vbd3 (3:)
    glpvmntpgsnqyltadnfqspcalpefdvtppidipgevknmmelaeidtmipfdlsat
    kkntmemyrvrlsdkphtddpilclslspasdprlshtmlgeilnyythwagslkftflf
    cgsmmatgkllvsyappgadppkkrkeamlgthviwdiglqssctmvvpwisnttyrqti
    ddsfteggyisvfyqtrivvplstpremdilgfvsacndfsvrllrdtthieqkalaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >1vbd3 (3:)
    glpvmntpgsnqyltadnfqspcalpefdvtppidipgevknmmelaeidtmipfdlsat
    kkntmemyrvrlsdkphtddpilclslspasdprlshtmlgeilnyythwagslkftflf
    cgsmmatgkllvsyappgadppkkrkeamlgthviwdiglqssctmvvpwisnttyrqti
    ddsfteggyisvfyqtrivvplstpremdilgfvsacndfsvrllrdtthieqka
    

  • Chain '4':
    Sequence, based on SEQRES records: (download)
    >1vbd4 (4:)
    gaqvssqkvgahensnrayggstinyttinyyrdsasnaaskqdfsqdpskftepikdvl
    iktapmln
    

    Sequence, based on observed residues (ATOM records): (download)
    >1vbd4 (4:)
    gaqvssqkvgahensstinyttinyyrdsasnaaskqdfsqdpskftepikdvliktapm
    ln