PDB entry 1v9u
View 1v9u on RCSB PDB site
Description: Human Rhinovirus 2 bound to a fragment of its cellular receptor protein
Class: Virus/Receptor
Keywords: human rhinovirus, VLDL-receptor, virus-protein complex, Icosahedral virus
Deposited on
2004-02-03, released
2004-05-04
The last revision prior to the SCOP 1.75 freeze date was dated
2004-05-04, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 3.6 Å
R-factor: 0.285
AEROSPACI score: 0.06
(click here for full SPACI score report)
Chains and heterogens:
- Chain '1':
Compound: coat protein vp1
Species: Human rhinovirus 2
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1v9u1_ - Chain '2':
Compound: coat protein vp2
Species: Human rhinovirus 2
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1v9u.1 - Chain '3':
Compound: coat protein vp3
Species: Human rhinovirus 2
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1v9u3_ - Chain '4':
Compound: coat protein vp4
Species: Human rhinovirus 2
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1v9u.1 - Chain '5':
Compound: LDL-receptor class A 3
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1v9u5_ - Heterogens: CA, DAO
PDB Chain Sequences:
- Chain '1':
Sequence, based on SEQRES records: (download)
>1v9u1 (1:)
npvenyidevlnevlvvpninssnpttsnsapaldaaetghtssvqpedvietryvqtsq
trdemslesflgrsgcihesklevtlanynkenftvwainlqemaqirrkfelftytrfd
seitlvpcisalsqdighitmqymyvppgapvpnsrddyawqsgtnasvfwqhgqayprf
slpflsvasayymfydgydeqdqnygtantnnmgslcsrivtekhihkvhimtriyhkak
hvkawcprppraleytrahrtnfkiedrsiqtaivtrpiittagpsdmy
Sequence, based on observed residues (ATOM records): (download)
>1v9u1 (1:)
lvvpninssnpttsnsapaldaaetghtssvqpedvietryvqtsqtrdemslesflgrs
gcihesklevtlanynkenftvwainlqemaqirrkfelftytrfdseitlvpcisalsq
dighitmqymyvppgapvpnsrddyawqsgtnasvfwqhgqayprfslpflsvasayymf
ydgydeqdqnygtantnnmgslcsrivtekhihkvhimtriyhkakhvkawcprpprale
ytrahrtnfkiedrsiqtaivtrpiitta
- Chain '2':
Sequence, based on SEQRES records: (download)
>1v9u2 (2:)
sptveacgysdriiqitrgdstitsqdvanaivaygvwphylsskdasaidkpsqpdtss
nrfytlrsvtwsssskgwwwklpdalkdmgifgenmfyhylgrsgytihvqcnaskfhqg
tlivalipehqiasalhgnvnvgynythpgetgrevkaetrlnpdlqpteeywlnfdgtl
lgnitifphqfinlrsnnsatiiapyvnavpmdsmrshnnwslviipicpletssainti
pitisispmcaefsgarakrq
Sequence, based on observed residues (ATOM records): (download)
>1v9u2 (2:)
riiqitrgdstitsqdvanaivaygvwphylsskdasaidkpsqpdtssnrfytlrsvtw
sssskgwwwklpdalkdmgifgenmfyhylgrsgytihvqcnaskfhqgtlivalipehq
iasalhgnvnvgynythpgetgrevkaetrlnpdlqpteeywlnfdgtllgnitifphqf
inlrsnnsatiiapyvnavpmdsmrshnnwslviipicpletssaintipitisispmca
efsgarakrq
- Chain '3':
Sequence; same for both SEQRES and ATOM records: (download)
>1v9u3 (3:)
glpvfitpgsgqflttddfqspcalpwyhptkeisipgevknlveicqvdslvpinntdt
yinsenmysvvlqssinapdkifsirtdvasqplattligeissyfthwtgslrfsfmfc
gtanttvklllaytppgiaepttrkdamlgthviwdvglqstismvvpwisashyrntsp
grstsgyitcwyqtrlvippqtpptarllcfvsgckdfclrmardtnlhlqsgaiaq
- Chain '4':
Sequence, based on SEQRES records: (download)
>1v9u4 (4:)
gaqvsrqnvgthstqnsvsngsslnyfninyfkdaasngaskleftqdpskftdpvkdvl
ekgiptlq
Sequence, based on observed residues (ATOM records): (download)
>1v9u4 (4:)
aqvsrqnyfninyfkdaasngaskl
- Chain '5':
Sequence, based on SEQRES records: (download)
>1v9u5 (5:)
rtcriheiscgahstqcipvswrcdgendcdsgedeencgn
Sequence, based on observed residues (ATOM records): (download)
>1v9u5 (5:)
criheiscgahstqcipvswrcdgendcdsgedeencgn