PDB entry 1v7m
View 1v7m on RCSB PDB site
Description: Human Thrombopoietin Functional Domain Complexed To Neutralizing Antibody TN1 Fab
Class: immune system/cytokine
Keywords: Thrombopoietin, Fab fragment, Complex (Cytokine/Antibody), IMMUNE SYSTEM/CYTOKINE COMPLEX
Deposited on
2003-12-18, released
2004-03-02
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: 0.232
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: Monoclonal TN1 Fab Heavy Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1v7mh1, d1v7mh2 - Chain 'I':
Compound: Monoclonal TN1 Fab Heavy Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1v7mi1, d1v7mi2 - Chain 'L':
Compound: Monoclonal TN1 Fab Light Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1v7ml1, d1v7ml2 - Chain 'M':
Compound: Monoclonal TN1 Fab Light Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1v7mm1, d1v7mm2 - Chain 'V':
Compound: Thrombopoietin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1v7mv_ - Chain 'X':
Compound: Thrombopoietin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1v7mx_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1v7mH (H:)
evkleesggglvqpggsmklscaasgftfsdawmdwvrqspekglewvaeirskvnnhai
hyaesvkgrftvsrddskssvylqmnslraedtgiyycsgwsflywgqgtlvtvsaaktt
ppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytl
sssvtvpsstwpsetvtcnvahpasstkvdkkivprd
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>1v7mI (I:)
evkleesggglvqpggsmklscaasgftfsdawmdwvrqspekglewvaeirskvnnhai
hyaesvkgrftvsrddskssvylqmnslraedtgiyycsgwsflywgqgtlvtvsaaktt
ppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytl
sssvtvpsstwpsetvtcnvahpasstkvdkkivprd
- Chain 'L':
Sequence, based on SEQRES records: (download)
>1v7mL (L:)
qvvltqspgimsaspgekvtitcsasssvsymywfqqkpgtspklwiystsnlasgvpar
frgsgsgtsysltisrmeaedaatyycqqrsgyprtfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec
Sequence, based on observed residues (ATOM records): (download)
>1v7mL (L:)
qvvltqspgimsaspgekvtitcsasssvsymywfqqkpgtspklwiystsnlasgvpar
frgsgsgtsysltisrmeaedaatyycqqrsgyprtfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrne
- Chain 'M':
Sequence, based on SEQRES records: (download)
>1v7mM (M:)
qvvltqspgimsaspgekvtitcsasssvsymywfqqkpgtspklwiystsnlasgvpar
frgsgsgtsysltisrmeaedaatyycqqrsgyprtfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec
Sequence, based on observed residues (ATOM records): (download)
>1v7mM (M:)
qvvltqspgimsaspgekvtitcsasssvsymywfqqkpgtspklwiystsnlasgvpar
frgsgsgtsysltisrmeaedaatyycqqrsgyprtfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrne
- Chain 'V':
Sequence, based on SEQRES records: (download)
>1v7mV (V:)
spappacdlrvlskllrdshvlhsrlsqcpevhplptpvllpavdfslgewktqmeetka
qdilgavtlllegvmaargqlgptclssllgqlsgqvrlllgalqsllgtqlppqgrtta
hkdpnaiflsfqhllrgkvrflmlvggstlcvrrappttavps
Sequence, based on observed residues (ATOM records): (download)
>1v7mV (V:)
cdlrvlskllrdshvlhsrlsqcpevhplptpvllpavdfslgewktqmeetkaqdilga
vtlllegvmaargqlgptclssllgqlsgqvrlllgalqsllgtqlppqgrttahkdpna
iflsfqhllrgkvrflmlvggstlc
- Chain 'X':
Sequence, based on SEQRES records: (download)
>1v7mX (X:)
spappacdlrvlskllrdshvlhsrlsqcpevhplptpvllpavdfslgewktqmeetka
qdilgavtlllegvmaargqlgptclssllgqlsgqvrlllgalqsllgtqlppqgrtta
hkdpnaiflsfqhllrgkvrflmlvggstlcvrrappttavps
Sequence, based on observed residues (ATOM records): (download)
>1v7mX (X:)
cdlrvlskllrdshvlhsrlsqcpevhplptpvllpavdfslgewktqmeetkaqdilga
vtlllegvmaargqlgptclssllgqlsgqvrlllgalqsllgtqlppqgrttahkdpna
iflsfqhllrgkvrflmlvggstlc