PDB entry 1v3y

View 1v3y on RCSB PDB site
Description: The crystal structure of peptide deformylase from Thermus thermophilus HB8
Class: hydrolase
Keywords: peptide deformylase, protein synthesis, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, hydrolase
Deposited on 2003-11-07, released 2004-12-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.81 Å
R-factor: 0.173
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P43522 (0-End)
      • modified residue (101)
    Domains in SCOPe 2.08: d1v3ya_
  • Chain 'B':
    Compound: Peptide deformylase
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P43522
      • modified residue (101)
    Domains in SCOPe 2.08: d1v3yb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1v3yA (A:)
mvypirlygdpvlrrkarpvedfsgikrlaedmletmfeakgvglaapqiglsqrlfvav
eyadepegeeerplrelvrrvyvvanpvityreglvegtegclslpglyseevpraerir
veyqdeegrgrvlelegymarvfqheidhldgilfferlpkpkreafleanraelvrfqk
earallkelsqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1v3yA (A:)
mvypirlygdpvlrrkarpvedfsgikrlaedmletmfeakgvglaapqiglsqrlfvav
elrelvrrvyvvanpvityreglvegtegclslpglyseevpraerirveyqdeegrgrv
lelegymarvfqheidhldgilfferlpkpkreafleanraelvrfqkea

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1v3yB (B:)
mvypirlygdpvlrrkarpvedfsgikrlaedmletmfeakgvglaapqiglsqrlfvav
eyadepegeeerplrelvrrvyvvanpvityreglvegtegclslpglyseevpraerir
veyqdeegrgrvlelegymarvfqheidhldgilfferlpkpkreafleanraelvrfqk
earallkelsqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1v3yB (B:)
vypirlygdpvlrrkarpvedfsgikrlaedmletmfeakgvglaapqiglsqrlfvave
yvrrvyvvanpvityreglvegtegclslpglyseevpraerirveyqdeegrgrvlele
gymarvfqheidhldgilfferlpkpkreafleanraelvrfqkear