PDB entry 1uzd

View 1uzd on RCSB PDB site
Description: chlamydomonas,spinach chimeric rubisco
Class: lyase
Keywords: lyase, rubisco, photosynthesis, carbon dioxide fixation, photorespiration, oxidoreductase, monooxygenase, chloroplast, transit peptide, multigene family
Deposited on 2004-03-11, released 2005-05-31
The last revision prior to the SCOP 1.73 freeze date was dated 2005-07-27, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.19
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Chlamydomonas reinhardtii
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00877 (Start-474)
      • conflict (45)
    Domains in SCOP 1.73: d1uzda1, d1uzda2
  • Chain 'B':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Chlamydomonas reinhardtii
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00877 (Start-474)
      • conflict (45)
    Domains in SCOP 1.73: d1uzdb1, d1uzdb2
  • Chain 'C':
    Compound: ribulose bisphosphate carboxylase small chain 1, ribulose bisphosphate carboxylase small chain 2
    Species: CHLAMYDOMONAS REINHARDTII, SPINACIA OLERACEA
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Chlamydomonas reinhardtii
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00877 (Start-474)
      • conflict (45)
    Domains in SCOP 1.73: d1uzde1, d1uzde2
  • Chain 'F':
    Compound: ribulose bisphosphate carboxylase small chain 1, ribulose bisphosphate carboxylase small chain 2
    Species: CHLAMYDOMONAS REINHARDTII, SPINACIA OLERACEA
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Chlamydomonas reinhardtii
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00877 (Start-474)
      • conflict (45)
    Domains in SCOP 1.73: d1uzdh1, d1uzdh2
  • Chain 'I':
    Compound: ribulose bisphosphate carboxylase small chain 1, ribulose bisphosphate carboxylase small chain 2
    Species: CHLAMYDOMONAS REINHARDTII, SPINACIA OLERACEA
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: ribulose bisphosphate carboxylase small chain 1, ribulose bisphosphate carboxylase small chain 2
    Species: CHLAMYDOMONAS REINHARDTII, SPINACIA OLERACEA
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Chlamydomonas reinhardtii
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00877 (Start-474)
      • conflict (45)
    Domains in SCOP 1.73: d1uzdk1, d1uzdk2
  • Chain 'M':
    Compound: ribulose bisphosphate carboxylase small chain 1, ribulose bisphosphate carboxylase small chain 2
    Species: CHLAMYDOMONAS REINHARDTII, SPINACIA OLERACEA
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Chlamydomonas reinhardtii
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00877 (Start-474)
      • conflict (45)
    Domains in SCOP 1.73: d1uzdo1, d1uzdo2
  • Chain 'P':
    Compound: ribulose bisphosphate carboxylase small chain 1, ribulose bisphosphate carboxylase small chain 2
    Species: CHLAMYDOMONAS REINHARDTII, SPINACIA OLERACEA
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Chlamydomonas reinhardtii
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00877 (Start-474)
      • conflict (45)
    Domains in SCOP 1.73: d1uzdr1, d1uzdr2
  • Chain 'T':
    Compound: ribulose bisphosphate carboxylase small chain 1, ribulose bisphosphate carboxylase small chain 2
    Species: CHLAMYDOMONAS REINHARDTII, SPINACIA OLERACEA
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Chlamydomonas reinhardtii
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00877 (Start-474)
      • conflict (45)
    Domains in SCOP 1.73: d1uzdv1, d1uzdv2
  • Chain 'W':
    Compound: ribulose bisphosphate carboxylase small chain 1, ribulose bisphosphate carboxylase small chain 2
    Species: CHLAMYDOMONAS REINHARDTII, SPINACIA OLERACEA
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, CAP, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1uzdA (A:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1uzdA (A:)
agfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaaesstgtwttvw
tdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsivgnvfgfkal
ralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklglsaknygravy
eclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghylnatagtceem
mkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhavidrqrnhgih
frvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsrgiyftqdwcs
mpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaanrvaleactqa
rnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1uzdB (B:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1uzdB (B:)
agagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaaesstgtwtt
vwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsivgnvfgfk
alralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklglsaknygra
vyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghylnatagtce
emmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhavidrqrnhg
ihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsrgiyftqdw
csmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaanrvaleact
qarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

  • Chain 'C':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1uzdE (E:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1uzdE (E:)
agfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaaesstgtwttvw
tdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsivgnvfgfkal
ralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklglsaknygravy
eclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghylnatagtceem
mkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhavidrqrnhgih
frvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsrgiyftqdwcs
mpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaanrvaleactqa
rnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

  • Chain 'F':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1uzdH (H:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1uzdH (H:)
tkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaaesstgtw
ttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsivgnvfg
fkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklglsaknyg
ravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghylnatagt
ceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhavidrqrn
hgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsrgiyftq
dwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaanrvalea
ctqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1uzdK (K:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1uzdK (K:)
tkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaaesstgtw
ttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsivgnvfg
fkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklglsaknyg
ravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghylnatagt
ceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhavidrqrn
hgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsrgiyftq
dwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaanrvalea
ctqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

  • Chain 'M':
    No sequence available.

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1uzdO (O:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1uzdO (O:)
tkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaaesstgtw
ttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsivgnvfg
fkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklglsaknyg
ravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghylnatagt
ceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhavidrqrn
hgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsrgiyftq
dwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaanrvalea
ctqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

  • Chain 'P':
    No sequence available.

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >1uzdR (R:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1uzdR (R:)
agfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaaesstgtwttvw
tdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsivgnvfgfkal
ralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklglsaknygravy
eclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghylnatagtceem
mkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhavidrqrnhgih
frvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsrgiyftqdwcs
mpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaanrvaleactqa
rnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

  • Chain 'T':
    No sequence available.

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1uzdV (V:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1uzdV (V:)
gagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaaesstgtwttv
wtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsivgnvfgfka
lralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklglsaknygrav
yeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghylnatagtcee
mmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhavidrqrnhgi
hfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsrgiyftqdwc
smpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaanrvaleactq
arnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl

  • Chain 'W':
    No sequence available.