PDB entry 1urj

View 1urj on RCSB PDB site
Description: Single stranded DNA-binding protein(ICP8) from Herpes simplex virus-1
Class: DNA binding protein
Keywords: DNA-binding protein, ssb, icp8, hsv-1, DNA-binding, DNA replication, zinc-finger, nuclear protein., DNA binding protein
Deposited on 2003-10-30, released 2004-11-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: major DNA-binding protein
    Species: HUMAN HERPESVIRUS 1 [TaxId:10298]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04296
      • engineered mutation (253)
      • engineered mutation (454)
    Domains in SCOPe 2.08: d1urja_
  • Chain 'B':
    Compound: major DNA-binding protein
    Species: HUMAN HERPESVIRUS 1 [TaxId:10298]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04296
      • engineered mutation (253)
      • engineered mutation (454)
    Domains in SCOPe 2.08: d1urjb_
  • Heterogens: ZN, HG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1urjA (A:)
metkpktattikvppgplgyvyaracpsegiellallsarsgdsdvavaplvvgltvesg
feanvavvvgsrttglggtavslkltpshysssvyvfhggrhldpstqapnltrlcerar
rhfgfsdytprpgdlkhettgealcerlgldpdrallylvvtegfkeavcinntflhlgg
sdkvtiggaevhripvyplqlfmpdfsrviaepfnanhrsigekftyplpffnrplnrll
feavvgpaavalrsrnvdavaraaahlafdenhegaalpaditftafeasqgktprggrd
gggkgaaggfeqrlasvmagdaalalesivsmavfdepptdisawplfegqdtaaarana
vgaylaraaglvgamvfstnsalhltevddagpadpkdhskpsfyrfflvpgthvaanpq
vdreghvvpgfegrptaplvggtqefagehlamlsgfspallakmlfylercdgavivgr
qemdvfryvadsnqtdvpcnlctfdtrhacvhttlmrlrarhpkfasaargaigvfgtmn
smysdcdvlgnyaafsalkradgsetartimqetyraatervmaeletlqyvdqavptam
grletiitnrealhtvvnnvrqvvdreveqlmrnlvegrnfkfrdglgeanhamsltldp
yacgpcpllqllgrrsnlavyqdlalsqchgvfagqsvegrnfrnqfqpvlrrrvmdmfn
ngflsaktltvalsegaaicapsltagqtapaessfegdvarvtlgfpkelrvksrvlfa
gasanaseaakarvaslqsayqkpdkrvdillgplgfllkqfhaaifpngkppgsnqpnp
qwfwtalqrnqlparllsredietiafikkfsldygainfinlapnnvselamyymanqi
lrycdhstyfintltaiiagsrrppsvqaaaawsaqggagleagaralmdavdahpgawt
smfascnllrpvmaarpmvvlglsiskyygmagndrvfqagnwaslmggknacpllifdr
trkfvlacpragfvcaasslgggahesslceqlrgiiseggaavassvfvatvkslgprt
qqlqiedwlalledeylseemmeltaralergngewstdaalevaheaealvsqlg

    Sequence, based on observed residues (ATOM records): (download) 
    >1urjA (A:)
ttikvppgplgyvyaracpsegiellallsarsgdsdvavaplvvgltvesgfeanvavv
vgsrttavslkltpshysssvyvfhggrhldpstqapnltrlcerarrhfgfsdytprpg
dlkhettgealcerlgldpdrallylvvtegfkeavcinntflhlggsdkvtiggaevhr
ipvyplqlfmpdfsrviaepfnanhrsigekftyplpffnrplnrllfeavvgpaavalr
srnvdavaraaahlafdenhegaalpaditftafaggfeqrlasvmagdaalalesivsm
avfdepptdisawplfegqdtaaaranavgaylaraaglvgamvfstnsalhltevddag
pahskpsfyrfflvpgthvaanpqvdreghvvpgfegrptaplvggtqefagehlamlsg
fspallakmlfylercdgavivmdvfryvadsnqtdvpcnlctfdtrhacvhttlmrlra
rhpkfasaargaigvfgtmnsmysdcdvlgnyaetyraatervmaeletlqyvdqavpta
mgrletiitnrealhtvvnnvrqvvdreveqlmrnlvefkfrdglgeanhamsltldpya
cgpcpllqllgrrsnlavyqdlalsqchgvfagqsvegrnfrnqfqpvlrrrvmdmfnng
flsaktltvalsaicapsltagqtapaessfegdvarvtlgfpkelrvksrvlfsayqkp
dkrvdillgplgfllkqfhaaifpngkppgsnqpnpqwfwtalqrnqlparllsrediet
iafikkfsldygainfinlapnnvselamyymanqilrycdhstyfintltaiiagsrrp
psvqaaaawsaqggagleagaralmdavdahpgawtsmfascnllrpvmaarpmvvlgls
iskyvfqagnwaslmggknacpllifdrtrkfvlacpragfvcaasslceqlrgiisegg
aavassvfvatvkslgprtqqlqiedwlalledeylseemmeltaralergngewstdaa
levaheaea

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1urjB (B:)
metkpktattikvppgplgyvyaracpsegiellallsarsgdsdvavaplvvgltvesg
feanvavvvgsrttglggtavslkltpshysssvyvfhggrhldpstqapnltrlcerar
rhfgfsdytprpgdlkhettgealcerlgldpdrallylvvtegfkeavcinntflhlgg
sdkvtiggaevhripvyplqlfmpdfsrviaepfnanhrsigekftyplpffnrplnrll
feavvgpaavalrsrnvdavaraaahlafdenhegaalpaditftafeasqgktprggrd
gggkgaaggfeqrlasvmagdaalalesivsmavfdepptdisawplfegqdtaaarana
vgaylaraaglvgamvfstnsalhltevddagpadpkdhskpsfyrfflvpgthvaanpq
vdreghvvpgfegrptaplvggtqefagehlamlsgfspallakmlfylercdgavivgr
qemdvfryvadsnqtdvpcnlctfdtrhacvhttlmrlrarhpkfasaargaigvfgtmn
smysdcdvlgnyaafsalkradgsetartimqetyraatervmaeletlqyvdqavptam
grletiitnrealhtvvnnvrqvvdreveqlmrnlvegrnfkfrdglgeanhamsltldp
yacgpcpllqllgrrsnlavyqdlalsqchgvfagqsvegrnfrnqfqpvlrrrvmdmfn
ngflsaktltvalsegaaicapsltagqtapaessfegdvarvtlgfpkelrvksrvlfa
gasanaseaakarvaslqsayqkpdkrvdillgplgfllkqfhaaifpngkppgsnqpnp
qwfwtalqrnqlparllsredietiafikkfsldygainfinlapnnvselamyymanqi
lrycdhstyfintltaiiagsrrppsvqaaaawsaqggagleagaralmdavdahpgawt
smfascnllrpvmaarpmvvlglsiskyygmagndrvfqagnwaslmggknacpllifdr
trkfvlacpragfvcaasslgggahesslceqlrgiiseggaavassvfvatvkslgprt
qqlqiedwlalledeylseemmeltaralergngewstdaalevaheaealvsqlg

    Sequence, based on observed residues (ATOM records): (download) 
    >1urjB (B:)
ttikvppgplgyvyaracpsegiellallsarsgdsdvavaplvvgltvesgfeanvavv
vgsrttavslkltpshysssvyvfhggrhldpstqapnltrlcerarrhfgfsdytprpg
dlkhettgealcerlgldpdrallylvvtegfkeavcinntflhlggsdkvtiggaevhr
ipvyplqlfmpdfsrviaepfnanhrsigekftyplpffnrplnrllfeavvgpaavalr
srnvdavaraaahlafdenhegaalpaditftafggfeqrlasvmagdaalalesivsma
vfdepptdisawplfegqdtaaaranavgaylaraaglvgamvfstnsalhltevddagp
ahskpsfyrfflvpgthvaanpqvdreghvvpgfegrptaplvggtqefagehlamlsgf
spallakmlfylercdgavivmdvfryvadsnqtdvpcnlctfdtrhacvhttlmrlrar
hpkfasaargaigvfgtmnsmysdcdvlgnyaetyraatervmaeletlqyvdqavptam
grletiitnrealhtvvnnvrqvvdreveqlmrnlvefkfrdglgeanhamsltldpyac
gpcpllqllgrrsnlavyqdlalsqchgvfagqsvegrnfrnqfqpvlrrrvmdmfnngf
lsaktltvalsegaaicapsltagqtapaessfegdvarvtlgfpkelrvksrvlfsayq
kpdkrvdillgplgfllkqfhaaifpngkppgsnqpnpqwfwtalqrnqlparllsredi
etiafikkfsldygainfinlapnnvselamyymanqilrycdhstyfintltaiiagsr
rppsvqaaaawsaqggagleagaralmdavdahpgawtsmfascnllrpvmaarpmvvlg
lsiskyvfqagnwaslmggknacpllifdrtrkfvlacpragfvcaasslceqlrgiise
ggaavassvfvatvkslgprtqqlqiedwlalledeylseemmeltaralergngewstd
aalevaheaea