PDB entry 1upu
View 1upu on RCSB PDB site
Description: structure of the uracil phosphoribosyltransferase, mutant c128v, bound to product uridine-1-monophosphate (ump)
Class: transferase
Keywords: transferase, glycosyltransferase, phosphoribosyltransferase
Deposited on
1998-04-16, released
1999-05-11
The last revision prior to the SCOPe 2.07 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.148
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: uracil phosphoribosyltransferase
Species: Toxoplasma gondii [TaxId:5811]
Database cross-references and differences (RAF-indexed):
- Uniprot Q26998 (0-223)
- conflict (63)
- engineered (107)
- conflict (136)
Domains in SCOPe 2.07: d1upua_ - Chain 'B':
Compound: uracil phosphoribosyltransferase
Species: Toxoplasma gondii [TaxId:5811]
Database cross-references and differences (RAF-indexed):
- Uniprot Q26998 (0-223)
- conflict (63)
- engineered (107)
- conflict (136)
Domains in SCOPe 2.07: d1upub_ - Chain 'C':
Compound: uracil phosphoribosyltransferase
Species: Toxoplasma gondii [TaxId:5811]
Database cross-references and differences (RAF-indexed):
- Uniprot Q26998 (0-223)
- conflict (63)
- engineered (107)
- conflict (136)
Domains in SCOPe 2.07: d1upuc_ - Chain 'D':
Compound: uracil phosphoribosyltransferase
Species: Toxoplasma gondii [TaxId:5811]
Database cross-references and differences (RAF-indexed):
- Uniprot Q26998 (0-223)
- conflict (63)
- engineered (107)
- conflict (136)
Domains in SCOPe 2.07: d1upud_ - Heterogens: PO4, U5P, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1upuA (A:)
qeesilqdiitrfpnvvlmkqtaqlrammtiirdketpkeefvfyadrlirllieealne
lpfqkkevttpldvsyhgvsfyskicgvsivragesmesglravcrgvrigkiliqrdet
taepkliyeklpadirerwvmlldpmcatagsvckaievllrlgvkeeriifvnilaapq
giervfkeypkvrmvtaavdiclnsryyivpgigdfgdryfgtm
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1upuB (B:)
qeesilqdiitrfpnvvlmkqtaqlrammtiirdketpkeefvfyadrlirllieealne
lpfqkkevttpldvsyhgvsfyskicgvsivragesmesglravcrgvrigkiliqrdet
taepkliyeklpadirerwvmlldpmcatagsvckaievllrlgvkeeriifvnilaapq
giervfkeypkvrmvtaavdiclnsryyivpgigdfgdryfgtm
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1upuC (C:)
qeesilqdiitrfpnvvlmkqtaqlrammtiirdketpkeefvfyadrlirllieealne
lpfqkkevttpldvsyhgvsfyskicgvsivragesmesglravcrgvrigkiliqrdet
taepkliyeklpadirerwvmlldpmcatagsvckaievllrlgvkeeriifvnilaapq
giervfkeypkvrmvtaavdiclnsryyivpgigdfgdryfgtm
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1upuD (D:)
qeesilqdiitrfpnvvlmkqtaqlrammtiirdketpkeefvfyadrlirllieealne
lpfqkkevttpldvsyhgvsfyskicgvsivragesmesglravcrgvrigkiliqrdet
taepkliyeklpadirerwvmlldpmcatagsvckaievllrlgvkeeriifvnilaapq
giervfkeypkvrmvtaavdiclnsryyivpgigdfgdryfgtm