PDB entry 1ups

View 1ups on RCSB PDB site
Description: glcnac[alpha]1-4gal releasing endo-[beta]-galactosidase from clostridium perfringens
Class: glycosyl hydrolase
Keywords: endo-galactosidase,clostridium perfringens,glycosyl hydrolase,psi,protein structure initiative,southeast collaboratory for structural genomics,secsg
Deposited on 2003-10-10, released 2004-11-25
The last revision prior to the SCOP 1.73 freeze date was dated 2005-05-04, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: 0.1773
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glcnac-alpha-1,4-gal-releasing endo-beta-galactosidase
    Species: Clostridium perfringens
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1upsa1, d1upsa2
  • Chain 'B':
    Compound: glcnac-alpha-1,4-gal-releasing endo-beta-galactosidase
    Species: Clostridium perfringens
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1upsb1, d1upsb2
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1upsA (A:)
mfvfmlllllpftiskakdfpanpiekagykldfsdefngptldrekwtdyylphwckdp
esakanyrfengslveyitedqkpwcpehdgtvrssaimsfdkswihnfsgttdnherne
wrgyttkygyfeiraklsntgggghqawwmvgmqddtndwfnskqtgeidiletffskkd
twriaaygwndpnfqtswtisedkvpsgdptseyhiyamewtptalkfyydnelfkviyg
spdyemgtilniytdagsgahndvwpkewaidymrvwkpvdgykeseslnnylirnrqtg
kflyieenndkvsygditlkneknakwskeyrdgytllknnetgeylnienqtgyiehgk
vpktwwsaqwsevpvdgytrfvnrwkpnmsihtesyegvlqygnvpntywtsqwqlipve

    Sequence, based on observed residues (ATOM records): (download) 
    >1upsA (A:)
akdfpanpiekagykldfsdefngptldrekwtdyylphwckdpesakanyrfengslve
yitedqkpwcpehdgtvrssaimsfdkswihnfsgttdnhernewrgyttkygyfeirak
lsntgggghqawwmvgmqddtndwfnskqtgeidiletffskkdtwriaaygwndpnfqt
swtisedkvpsgdptseyhiyamewtptalkfyydnelfkviygspdyemgtilniytda
gsgahndvwpkewaidymrvwkpvdgykeslnnylirnrqtgkflyieenndkvsygdit
lkneknakwskeyrdgytllknnetgeylnienqtgyiehgkvpktwwsaqwsevpvdgy
trfvnrwkpnmsihtesyegvlqygnvpntywtsqwqlipve

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1upsB (B:)
mfvfmlllllpftiskakdfpanpiekagykldfsdefngptldrekwtdyylphwckdp
esakanyrfengslveyitedqkpwcpehdgtvrssaimsfdkswihnfsgttdnherne
wrgyttkygyfeiraklsntgggghqawwmvgmqddtndwfnskqtgeidiletffskkd
twriaaygwndpnfqtswtisedkvpsgdptseyhiyamewtptalkfyydnelfkviyg
spdyemgtilniytdagsgahndvwpkewaidymrvwkpvdgykeseslnnylirnrqtg
kflyieenndkvsygditlkneknakwskeyrdgytllknnetgeylnienqtgyiehgk
vpktwwsaqwsevpvdgytrfvnrwkpnmsihtesyegvlqygnvpntywtsqwqlipve

    Sequence, based on observed residues (ATOM records): (download) 
    >1upsB (B:)
dfpanpiekagykldfsdefngptldrekwtdyylphwckdpesakanyrfengslveyi
tedqkpwcpehdgtvrssaimsfdkswihnfsgttdnhernewrgyttkygyfeirakls
ntgggghqawwmvgmqddtndwfnskqtgeidiletffskkdtwriaaygwndpnfqtsw
tisedkvpsgdptseyhiyamewtptalkfyydnelfkviygspdyemgtilniytdags
gahndvwpkewaidymrvwkpvdgyknnylirnrqtgkflyieenndkvsygditlknek
nakwskeyrdgytllknnetgeylnienqtgyiehgkvpktwwsaqwsevpvdgytrfvn
rwkpnmsihtesyegvlqygnvpntywtsqwqlipve