PDB entry 1upn

View 1upn on RCSB PDB site
Description: complex of echovirus type 12 with domains 3 and 4 of its receptor decay accelerating factor (cd55) by cryo electron microscopy at 16 a
Deposited on 2003-10-08, released 2004-01-07
The last revision prior to the SCOP 1.67 freeze date was dated 2004-01-29, with a file datestamp of 2004-01-29.
Experiment type: EM
Resolution: 16 Å
R-factor: N/A
AEROSPACI score: -0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Domains in SCOP 1.67: d1upna_
  • Chain 'B':
    Domains in SCOP 1.67: d1upn.1
  • Chain 'C':
    Domains in SCOP 1.67: d1upnc_
  • Chain 'D':
    Domains in SCOP 1.67: d1upn.1
  • Chain 'E':
    Domains in SCOP 1.67: d1upne1, d1upne2

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1upnA (A:)
gdvveavenavarvadtigsgpsnsqavpaltavetghtsqvtpsdtvqtrhvknyhsrs
essienflsrsacvymgeyhttnsdqtklfaswtisarrmvqmrrkleiftyvrfdvevt
fvitskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnappr
msipfisignaysnfydgwshfsqngvygyntlnhmgqiyvrhvngssplpmtstvrmyf
kpkhvkawvprpprlcqyknastvnfsptditdkrnsityipdtvkpdvsnh

    Sequence, based on observed residues (ATOM records): (download) 
    >1upnA (A:)
gdvveavenavarvadtigsgpsnsqavpaltavetghtsqvtpsdtvqtrhvknyhsrs
essienflsrsacvymgeyhttnsdqtklfaswtisarrmvqmrrkleiftyvrfdvevt
fvitskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnappr
msipfisignaysnfydgwshfsqngvygyntlnhmgqiyvrhvngssplpmtstvrmyf
kpkhvkawvprpprlcqyknastvnfsptditdkrnsityipdtvkpdv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1upnB (B:)
spsaeecgysdrvrsitlgnstittqesanvvvgygrwpeylrddeataedqptqpdvat
crfytlesvtwekdspgwwwkfpdalkdmglfgqnmyyhylgragytihvqcnaskfhqg
cllvvcvpeaemgcstvdgtvnehglsegetakkfsatgtngtntvqsivtnagmgvgvg
nltifphqwinlrtnncativmpyinnvpmdnmfrhhnftlmiipfvplnyssdfstyvp
itvtvapmcaeynglrlstalq

    Sequence, based on observed residues (ATOM records): (download) 
    >1upnB (B:)
sdrvrsitlgnstittqesanvvvgygrwpeylrddeataedqptqpdvatcrfytlesv
twekdspgwwwkfpdalkdmglfgqnmyyhylgragytihvqcnaskfhqgcllvvcvpe
aemgcstvdgtvnehglsegetakkfsatgtngtntvqsivtnagmgvgvgnltifphqw
inlrtnncativmpyinnvpmdnmfrhhnftlmiipfvplnyssdfstyvpitvtvapmc
aeynglrlstal

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1upnC (C:)
glpvintpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnvag
nletmdiyripvqsgnhqssqvfgfqvqpgldgvfkhtllgeilnyyahwsgsikltfvf
cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqthyrlvq
qdeytsagnvtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfiqqaallq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1upnD (D:)
mgaqvstqktgahetglrasgnsiihytninyykdaasnsanrqdftqdpgkftepvkdi
mvkslpaln

    Sequence, based on observed residues (ATOM records): (download) 
    >1upnD (D:)
gaqvstqktgahesiihytninyykdaasnsanrqdftqdpgkftepvkdimvkslpaln

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1upnE (E:)
fckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqwsdp
lpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnndegew
sgpppecrg

    Sequence, based on observed residues (ATOM records): (download) 
    >1upnE (E:)
kscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqwsdplpec
reiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnndegewsgpp
pecrg