PDB entry 1uli

View 1uli on RCSB PDB site
Description: Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1
Class: oxidoreductase
Keywords: Alpha3 Beta3 hetero hexamer, OXIDOREDUCTASE
Deposited on 2003-09-12, released 2004-09-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.169
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: biphenyl dioxygenase large subunit
    Species: Rhodococcus sp. [TaxId:101510]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ulia1, d1ulia2
  • Chain 'B':
    Compound: biphenyl dioxygenase small subunit
    Species: Rhodococcus sp. [TaxId:101510]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ulib_
  • Chain 'C':
    Compound: biphenyl dioxygenase large subunit
    Species: Rhodococcus sp. [TaxId:101510]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ulic1, d1ulic2
  • Chain 'D':
    Compound: biphenyl dioxygenase small subunit
    Species: Rhodococcus sp. [TaxId:101510]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ulid_
  • Chain 'E':
    Compound: biphenyl dioxygenase large subunit
    Species: Rhodococcus sp. [TaxId:101510]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ulie1, d1ulie2
  • Chain 'F':
    Compound: biphenyl dioxygenase small subunit
    Species: Rhodococcus sp. [TaxId:101510]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ulif_
  • Heterogens: FE2, FES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1uliA (A:)
mtdvqcepalagrkpkwadadiaelvdertgrldpriytdealyeqelerifgrswllmg
hetqipkagdfmtnymgedpvmvvrqkngeirvflnqcrhrgmricradggnaksftcsy
hgwaydtggnlvsvpfeeqafpglrkedwgplqarvetykglifanwdadapdldtylge
akfymdhmldrteagteaipgiqkwvipcnwkfaaeqfcsdmyhagttshlsgilaglpd
gvdlselapptegiqyratwgghgsgfyigdpnlllaimgpkvteywtqgpaaekaserl
gstergqqlmaqhmtifptcsflpgintirawhprgpneievwaftvvdadapeemkeey
rqqtlrtfsaggvfeqddgenwveiqqvlrghkarsrpfnaemglgqtdsdnpdypgtis
yvyseeaarglytqwvrmmtspdwaaldatrpavsestht

    Sequence, based on observed residues (ATOM records): (download) 
    >1uliA (A:)
wadadiaelvdertgrldpriytdealyeqelerifgrswllmghetqipkagdfmtnym
gedpvmvvrqkngeirvflnqcrhrgmricradggnaksftcsyhgwaydtggnlvsvpf
eeqafpglrkedwgplqarvetykglifanwdadapdldtylgeakfymdhmldrteagt
eaipgiqkwvipcnwkfaaeqfcsdmyhagttshlsgilaglptegiqyratwgghgsgf
yigdpnlllaimgpkvteywtqgpaaekaserlgstergqqlmaqhmtifptcsflpgin
tirawhprgpneievwaftvvdadapeemkeeyrqqtlrtfsaggvfeqddgenwveiqq
vlrghkarsrpfnaemglgqtdsdnpdypgtisyvyseeaarglytqwvrmmtspdwaal
datr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1uliB (B:)
midaespttafrtkpapvdpslqheieqfyyweakllndrrfqewfdllaedihyfmpir
ttrimretaqeysgareyahfddnaqmmrgrlrkitsdvswsenpasrtrhvisnvmivd
gekpgeyhvssvfivyrnrlerqldifagerkdilrrtgseagfelakrtilidqstils
nnlsfff

    Sequence, based on observed residues (ATOM records): (download) 
    >1uliB (B:)
frtkpapvdpslqheieqfyyweakllndrrfqewfdllaedihyfmpirttrimretaq
eysgareyahfddnaqmmrgrlrkitsdvswsenpasrtrhvisnvmivdgekpgeyhvs
svfivyrnrlerqldifagerkdilrrtgseagfelakrtilidqstilsnnlsfff

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1uliC (C:)
mtdvqcepalagrkpkwadadiaelvdertgrldpriytdealyeqelerifgrswllmg
hetqipkagdfmtnymgedpvmvvrqkngeirvflnqcrhrgmricradggnaksftcsy
hgwaydtggnlvsvpfeeqafpglrkedwgplqarvetykglifanwdadapdldtylge
akfymdhmldrteagteaipgiqkwvipcnwkfaaeqfcsdmyhagttshlsgilaglpd
gvdlselapptegiqyratwgghgsgfyigdpnlllaimgpkvteywtqgpaaekaserl
gstergqqlmaqhmtifptcsflpgintirawhprgpneievwaftvvdadapeemkeey
rqqtlrtfsaggvfeqddgenwveiqqvlrghkarsrpfnaemglgqtdsdnpdypgtis
yvyseeaarglytqwvrmmtspdwaaldatrpavsestht

    Sequence, based on observed residues (ATOM records): (download) 
    >1uliC (C:)
wadadiaelvdertgrldpriytdealyeqelerifgrswllmghetqipkagdfmtnym
gedpvmvvrqkngeirvflnqcrhrgmricradggnaksftcsyhgwaydtggnlvsvpf
eeqafpglrkedwgplqarvetykglifanwdadapdldtylgeakfymdhmldrteagt
eaipgiqkwvipcnwkfaaeqfcsdmyhagttshlsgilagltegiqyratwgghgsgfy
igdpnlllaimgpkvteywtqgpaaekaserlgstergqqlmaqhmtifptcsflpgint
irawhprgpneievwaftvvdadapeemkeeyrqqtlrtfsaggvfeqddgenwveiqqv
lrghkarsrpfnaemglgqtdsdnpdypgtisyvyseeaarglytqwvrmmtspdwaald
atrpa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1uliD (D:)
midaespttafrtkpapvdpslqheieqfyyweakllndrrfqewfdllaedihyfmpir
ttrimretaqeysgareyahfddnaqmmrgrlrkitsdvswsenpasrtrhvisnvmivd
gekpgeyhvssvfivyrnrlerqldifagerkdilrrtgseagfelakrtilidqstils
nnlsfff

    Sequence, based on observed residues (ATOM records): (download) 
    >1uliD (D:)
afrtkpapvdpslqheieqfyyweakllndrrfqewfdllaedihyfmpirttrimreta
qeysgareyahfddnaqmmrgrlrkitsdvswsenpasrtrhvisnvmivdgekpgeyhv
ssvfivyrnrlerqldifagerkdilrrtgseagfelakrtilidqstilsnnlsfff

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1uliE (E:)
mtdvqcepalagrkpkwadadiaelvdertgrldpriytdealyeqelerifgrswllmg
hetqipkagdfmtnymgedpvmvvrqkngeirvflnqcrhrgmricradggnaksftcsy
hgwaydtggnlvsvpfeeqafpglrkedwgplqarvetykglifanwdadapdldtylge
akfymdhmldrteagteaipgiqkwvipcnwkfaaeqfcsdmyhagttshlsgilaglpd
gvdlselapptegiqyratwgghgsgfyigdpnlllaimgpkvteywtqgpaaekaserl
gstergqqlmaqhmtifptcsflpgintirawhprgpneievwaftvvdadapeemkeey
rqqtlrtfsaggvfeqddgenwveiqqvlrghkarsrpfnaemglgqtdsdnpdypgtis
yvyseeaarglytqwvrmmtspdwaaldatrpavsestht

    Sequence, based on observed residues (ATOM records): (download) 
    >1uliE (E:)
wadadiaelvdertgrldpriytdealyeqelerifgrswllmghetqipkagdfmtnym
gedpvmvvrqkngeirvflnqcrhrgmricradggnaksftcsyhgwaydtggnlvsvpf
eeqafpglrkedwgplqarvetykglifanwdadapdldtylgeakfymdhmldrteagt
eaipgiqkwvipcnwkfaaeqfcsdmyhagttshlsgilaglptegiqyratwgghgsgf
yigdpnlllaimgpkvteywtqgpaaekaserlgstergqqlmaqhmtifptcsflpgin
tirawhprgpneievwaftvvdadapeemkeeyrqqtlrtfsaggvfeqddgenwveiqq
vlrghkarsrpfnaemglgqtdsdnpdypgtisyvyseeaarglytqwvrmmtspdwaal
datrp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1uliF (F:)
midaespttafrtkpapvdpslqheieqfyyweakllndrrfqewfdllaedihyfmpir
ttrimretaqeysgareyahfddnaqmmrgrlrkitsdvswsenpasrtrhvisnvmivd
gekpgeyhvssvfivyrnrlerqldifagerkdilrrtgseagfelakrtilidqstils
nnlsfff

    Sequence, based on observed residues (ATOM records): (download) 
    >1uliF (F:)
frtkpapvdpslqheieqfyyweakllndrrfqewfdllaedihyfmpirttrimretaq
eysgareyahfddnaqmmrgrlrkitsdvswsenpasrtrhvisnvmivdgekpgeyhvs
svfivyrnrlerqldifagerkdilrrtgseagfelakrtilidqstilsnnlsfff