PDB entry 1udz

View 1udz on RCSB PDB site
Description: Isoleucyl-tRNA synthetase editing domain
Class: ligase
Keywords: aminoacyl-trna synthetase, CP1, editing, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LIGASE
Deposited on 2003-05-08, released 2004-03-23
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.203
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: isoleucyl-tRNA synthetase
    Species: Thermus thermophilus [TaxId:274]
    Gene: iles
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56690 (Start-181)
      • see remark 999 (74)
      • see remark 999 (175)
    Domains in SCOPe 2.06: d1udza_
  • Chain 'B':
    Compound: isoleucyl-tRNA synthetase
    Species: Thermus thermophilus [TaxId:274]
    Gene: iles
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56690 (Start-181)
      • see remark 999 (74)
      • see remark 999 (175)
    Domains in SCOPe 2.06: d1udzb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1udzA (A:)
    mqdpsvyvrfplkepkklglekaslliwtttpwtlpgnvaaavhpeytyaafqvgdeali
    leeglgrkllgegtpvlktfpgkaleglpytppypqalekgyfvvladyvsqedgtgivh
    qapafgaedletarvyglpllktvdeegkllvepfkglyfreanrailrdlrgrgflfke
    es
    

    Sequence, based on observed residues (ATOM records): (download)
    >1udzA (A:)
    psvyvrfplkepkklglekaslliwtttpwtlpgnvaaavhpeytyaafqvgdealilee
    glgrkllgegtpvlktfpgkaleglpytppypqalekgyfvvladyvsqedgtgivhqap
    afgaedletarvyglpllktvdeegkllvepfkglyfreanrailrdlrgrgflfkees
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1udzB (B:)
    mqdpsvyvrfplkepkklglekaslliwtttpwtlpgnvaaavhpeytyaafqvgdeali
    leeglgrkllgegtpvlktfpgkaleglpytppypqalekgyfvvladyvsqedgtgivh
    qapafgaedletarvyglpllktvdeegkllvepfkglyfreanrailrdlrgrgflfke
    es
    

    Sequence, based on observed residues (ATOM records): (download)
    >1udzB (B:)
    psvyvrfplkepkklglekaslliwtttpwtlpgnvaaavhpeytyaafqvgdealilee
    glgrkllgegtpvlktfpgkaleglpytppypqalekgyfvvladyvsqedgtgivhqap
    afgaedletarvyglpllktvdeegkllvepfkglyfreanrailrdlrgrgflfkees