PDB entry 1ucy

View 1ucy on RCSB PDB site
Description: thrombin complexed with fibrinopeptide a alpha (residues 7-19). three complexes, one with epsilon-thrombin and two with alpha-thrombin
Class: complex (serine protease/coagulation)
Keywords: complex (serine protease/coagulation), serine, protease, thrombin
Deposited on 1996-08-30, released 1997-02-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.171
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'E':
    Compound: thrombin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ucy.1
  • Chain 'F':
    Compound: fibrinopeptide a-alpha
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12803 (Start-9)
      • conflict (9)
  • Chain 'G':
    Compound: fibrinopeptide a-alpha
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12803 (Start-9)
      • conflict (9)
  • Chain 'H':
    Compound: thrombin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ucy.1
  • Chain 'I':
    Compound: fibrinopeptide a-alpha
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12803 (Start-9)
      • conflict (9)
  • Chain 'J':
    Compound: thrombin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ucy.2
  • Chain 'K':
    Compound: thrombin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ucy.2
  • Chain 'L':
    Compound: thrombin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ucy.1
  • Chain 'M':
    Compound: thrombin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ucy.3
  • Chain 'N':
    Compound: thrombin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1ucy.3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ucyE (E:)
svaevqpsvlqvvnlplverpvckastriritdnmfcagykpgegkrgdacegdsggpfv
mkspynnrwyqmgivswgegcdrdgkygfythvfrlkkwiqkvidrlgs

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ucyH (H:)
ivegqdaevglspwqvmlfrkspqellcgaslisdrwvltaahcllyppwdknftvddll
vrigkhsrtryerkvekismldkiyihprynwkenldrdiallklkrpielsdyihpvcl
pdkqtaakllhagfkgrvtgwgnrretwtt

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1ucyJ (J:)
tsedhfqpffnektfgageadcglrplfekkqvqdqtekelfesyiegr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ucyJ (J:)
tfgageadcglrplfekkqvqdqtekelfesyiegr

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ucyK (K:)
ivegqdaevglspwqvmlfrkspqellcgaslisdrwvltaahcllyppwdknftvddll
vrigkhsrtryerkvekismldkiyihprynwkenldrdiallklkrpielsdyihpvcl
pdkqtaakllhagfkgrvtgwgnrretwttsvaevqpsvlqvvnlplverpvckastrir
itdnmfcagykpgegkrgdacegdsggpfvmkspynnrwyqmgivswgegcdrdgkygfy
thvfrlkkwiqkvidrlgs

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1ucyL (L:)
tsedhfqpffnektfgageadcglrplfekkqvqdqtekelfesyiegr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ucyL (L:)
tfgageadcglrplfekkqvqdqtekelfesyiegr

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1ucyM (M:)
tsedhfqpffnektfgageadcglrplfekkqvqdqtekelfesyiegr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ucyM (M:)
tfgageadcglrplfekkqvqdqtekelfesyiegr

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ucyN (N:)
ivegqdaevglspwqvmlfrkspqellcgaslisdrwvltaahcllyppwdknftvddll
vrigkhsrtryerkvekismldkiyihprynwkenldrdiallklkrpielsdyihpvcl
pdkqtaakllhagfkgrvtgwgnrretwttsvaevqpsvlqvvnlplverpvckastrir
itdnmfcagykpgegkrgdacegdsggpfvmkspynnrwyqmgivswgegcdrdgkygfy
thvfrlkkwiqkvidrlgs