PDB entry 1ubj

View 1ubj on RCSB PDB site
Description: Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Class: oxidoreductase
Keywords: High resolution crystal structure, [NiFe]hydrogenase, Oxidoreductase, Carbon Monoxide Complex
Deposited on 2003-04-04, released 2003-04-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-08-28, with a file datestamp of 2019-08-23.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: N/A
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: Desulfovibrio vulgaris str. 'Miyazaki F' [TaxId:883]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21852 (0-533)
      • see remark 999 (495-496)
    Domains in SCOPe 2.08: d1ubjl_
  • Chain 'S':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: Desulfovibrio vulgaris str. 'Miyazaki F' [TaxId:883]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ubjs_
  • Heterogens: SF4, F3S, MG, FNE, CMO, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ubjL (L:)
    ssysgpivvdpvtrieghlrievevengkvknayssstlfrgleiilkgrdprdaqhftq
    rtcgvctythalastrcvdnavgvhipknatyirnlvlgaqylhdhivhfyhlhaldfvd
    vtaalkadpakaakvassisprkttaadlkavqdklktfvetgqlgpftnayflgghpay
    yldpetnliatahylealrlqvkaaramavfgaknphtqftvvggvtcydaltpqriaef
    ealwketkafvdevyipdllvvaaaykdwtqyggtdnfitfgefpkdeydlnsrffkpgv
    vfkrdfknikpfdkmqieehvrhswyegaearhpwkgqtqpkytdlhgddryswmkapry
    mgepmetgplaqvliaysqghpkvkavtdavlaklgvgpealfstlgrtaargietavia
    eyvgvmlqeykdniakgdnvicapwempkqaegvgfvnaprgglshwiriedgkignfql
    vvpstwtlgprcdknklspveasligtpvadakrpveilrtvhsfdpciacgvh
    

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ubjS (S:)
    lmgprrpsvvylhnaectgcsesvlrafepyidtlildtlsldyhetimaaagdaaeaal
    eqavnsphgfiavveggiptaangiygkvanhtmldicsrilpkaqaviaygtcatfggv
    qaakpnptgakgvndalkhlgvkainiagcppnpynlvgtivyylknkaapeldslnrpt
    mffgqtvheqcprlphfdagefapsfeseearkgwclyelgckgpvtmnncpkikfnqtn
    wpvdaghpcigcsepdfwdamtpfyqn