PDB entry 1ubh

View 1ubh on RCSB PDB site
Description: Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Class: oxidoreductase
Keywords: High resolution crystal structure, [NiFe]hydrogenase, Oxidoreductase, Carbon Monoxide Complex
Deposited on 2003-04-04, released 2003-04-29
The last revision prior to the SCOP 1.73 freeze date was dated 2003-04-29, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: 0.131
AEROSPACI score: 0.74 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: Desulfovibrio vulgaris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21852 (0-533)
      • see remark 999 (495-496)
    Domains in SCOP 1.73: d1ubhl_
  • Chain 'S':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: Desulfovibrio vulgaris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ubhs_
  • Heterogens: MG, SF4, F3S, FNE, CMO, MPD, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ubhL (L:)
    ssysgpivvdpvtrieghlrievevengkvknayssstlfrgleiilkgrdprdaqhftq
    rtcgvctythalastrcvdnavgvhipknatyirnlvlgaqylhdhivhfyhlhaldfvd
    vtaalkadpakaakvassisprkttaadlkavqdklktfvetgqlgpftnayflgghpay
    yldpetnliatahylealrlqvkaaramavfgaknphtqftvvggvtcydaltpqriaef
    ealwketkafvdevyipdllvvaaaykdwtqyggtdnfitfgefpkdeydlnsrffkpgv
    vfkrdfknikpfdkmqieehvrhswyegaearhpwkgqtqpkytdlhgddryswmkapry
    mgepmetgplaqvliaysqghpkvkavtdavlaklgvgpealfstlgrtaargietavia
    eyvgvmlqeykdniakgdnvicapwempkqaegvgfvnaprgglshwiriedgkignfql
    vvpstwtlgprcdknklspveasligtpvadakrpveilrtvhsfdpciacgvh
    

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ubhS (S:)
    lmgprrpsvvylhnaectgcsesvlrafepyidtlildtlsldyhetimaaagdaaeaal
    eqavnsphgfiavveggiptaangiygkvanhtmldicsrilpkaqaviaygtcatfggv
    qaakpnptgakgvndalkhlgvkainiagcppnpynlvgtivyylknkaapeldslnrpt
    mffgqtvheqcprlphfdagefapsfeseearkgwclyelgckgpvtmnncpkikfnqtn
    wpvdaghpcigcsepdfwdamtpfyqn