PDB entry 1ub0
View 1ub0 on RCSB PDB site
Description: Crystal Structure Analysis of Phosphomethylpyrimidine Kinase (ThiD) from Thermus Thermophilus Hb8
Class: transferase
Keywords: Thiamin biosynthesis, ThiD, Ribokinase family, Phosphorylation, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE
Deposited on
2003-03-26, released
2003-04-08
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.207
AEROSPACI score: 0.43
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: phosphomethylpyrimidine kinase
Species: Thermus thermophilus [TaxId:274]
Gene: thiD
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1ub0a_ - Heterogens: SO4, DIO, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1ub0A (A:)
mrvaltiagsdsgggagvqadlkvffrfgvygtsaltlvtaqntlgvqrvhllppevvya
qiesvaqdfplhaaktgalgdaaiveavaeavrrfgvrplvvdpvmvaksgdpllakeaa
aalkerlfpladlvtpnrleaeallgrpirtlkeaeeaakallalgpkavllkgghlege
eavdllatrggvlrfsaprvhtrnthgtgctlsaaiaallakgrplaeavaeakayltra
lktapslghghgpldhwa
Sequence, based on observed residues (ATOM records): (download)
>1ub0A (A:)
mrvaltiagsdsgggagvqadlkvffrfgvygtsaltlvtaqntlgvqrvhllppevvya
qiesvaqdfplhaaktgalgdaaiveavaeavrrfgvrplvvdpvmakeaaaalkerlfp
ladlvtpnrleaeallgrpirtlkeaeeaakallalgpkavllkgghleavdllatrggv
lrfsaprvhtrnthgtgctlsaaiaallakgrplaeavaeakayltralktapslghghg
pldhwa