PDB entry 1u8l
View 1u8l on RCSB PDB site
Description: Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide DLDRWAS
Class: immune system
Keywords: Fab complex, HIV-1 Neutralization, gp41 Peptide
Deposited on
2004-08-06, released
2004-10-05
The last revision prior to the SCOP 1.75 freeze date was dated
2004-10-05, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.223
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: antibody 2f5 (light chain)
Species: HOMO SAPIENS
Domains in SCOP 1.75: d1u8la1, d1u8la2 - Chain 'B':
Compound: antibody 2f5 (heavy chain)
Species: HOMO SAPIENS
Domains in SCOP 1.75: d1u8lb1, d1u8lb2 - Chain 'C':
Compound: gp41 peptide
Species: synthetic, synthetic
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1u8lA (A:)
alqltqspsslsasvgdrititcrasqgvtsalawyrqkpgsppqlliydasslesgvps
rfsgsgsgteftltistlrpedfatyycqqlhfyphtfgggtrvdvrrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyecevthqglsspvtksfnrgec
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1u8lB (B:)
ritlkesgpplvkptqtltltcsfsgfslsdfgvgvgwirqppgkalewlaiiysdddkr
yspslntrltitkdtsknqvvlvmtrvspvdtatyfcahrrgpttlfgvpiargpvnamd
vwgqgitvtisststkgpsvfplapsskstagaaaalgclvkdyfpepvtvswnsgalts
gvhtfpavlqssglyslssvvtvpssslgtqtytcnvnhkpsntkvdkrvepksc
Sequence, based on observed residues (ATOM records): (download)
>1u8lB (B:)
ritlkesgpplvkptqtltltcsfsgfslsdfgvgvgwirqppgkalewlaiiysdddkr
yspslntrltitkdtsknqvvlvmtrvspvdtatyfcahrrgpttlfgvpiargpvnamd
vwgqgitvtisststkgpsvfplapgaaaalgclvkdyfpepvtvswnsgaltsgvhtfp
avlqssglyslssvvtvpssslqtytcnvnhkpsntkvdkrvepksc
- Chain 'C':
No sequence available.