PDB entry 1u1c

View 1u1c on RCSB PDB site
Description: Structure of E. coli uridine phosphorylase complexed to 5-benzylacyclouridine (BAU)
Class: transferase
Keywords: PYRIMIDINE NUCLEOSIDE PHOSPHORYLASE; URIDINE SALVAGE; benzylacyclouridine; BAU
Deposited on 2004-07-15, released 2005-07-05
The last revision prior to the SCOP 1.73 freeze date was dated 2005-07-05, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.219
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Escherichia coli
    Gene: UDP, B3831
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12758 (4-255)
      • cloning artifact (3)
    Domains in SCOP 1.73: d1u1ca1
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Escherichia coli
    Gene: UDP, B3831
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1u1cb1
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: Escherichia coli
    Gene: UDP, B3831
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1u1cc1
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: Escherichia coli
    Gene: UDP, B3831
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1u1cd1
  • Chain 'E':
    Compound: Uridine phosphorylase
    Species: Escherichia coli
    Gene: UDP, B3831
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1u1ce1
  • Chain 'F':
    Compound: Uridine phosphorylase
    Species: Escherichia coli
    Gene: UDP, B3831
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1u1cf1
  • Heterogens: PO4, K, BAU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1u1cA (A:)
gshmsksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwrael
dgkpvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrld
gaslhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvv
rhfkgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqt
eshavkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1u1cA (A:)
msksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgk
pvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1u1cB (B:)
gshmsksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwrael
dgkpvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrld
gaslhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvv
rhfkgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqt
eshavkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1u1cB (B:)
ksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpv
ivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslh
faplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkg
smeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqteshav
kivveaarrll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1u1cC (C:)
gshmsksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwrael
dgkpvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrld
gaslhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvv
rhfkgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqt
eshavkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1u1cC (C:)
sdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpvi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
aplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqteshavk
ivveaarrll

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1u1cD (D:)
gshmsksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwrael
dgkpvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrld
gaslhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvv
rhfkgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqt
eshavkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1u1cD (D:)
sdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpvi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
aplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqmkqteshavkivveaarr
ll

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1u1cE (E:)
gshmsksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwrael
dgkpvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrld
gaslhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvv
rhfkgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqt
eshavkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1u1cE (E:)
ksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpv
ivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslh
faplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkg
smeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqteshav
kivveaarrll

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1u1cF (F:)
gshmsksdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwrael
dgkpvivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrld
gaslhfaplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvv
rhfkgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqt
eshavkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1u1cF (F:)
sdvfhlgltkndlqgatlaivpgdpdrvekiaalmdkpvklashrefttwraeldgkpvi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
aplefpavadfecttalveaaksigatthvgvtassdtfypgqerydtysgrvvrhfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqteshavk
ivveaarrll