PDB entry 1tuf

View 1tuf on RCSB PDB site
Description: Crystal structure of Diaminopimelate Decarboxylase from m. jannaschi
Class: lyase
Keywords: antibiotic resistance, diamnopimilate decarboxylase, lysine biosynthesis, structural genomics, NYSGXRC, T135, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, LYASE
Deposited on 2004-06-24, released 2004-07-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.204
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: diaminopimelate decarboxylase
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: LYSA, MJ1097
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q58497 (0-433)
      • modified residue (68)
    Domains in SCOPe 2.06: d1tufa1, d1tufa2
  • Chain 'B':
    Compound: diaminopimelate decarboxylase
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: LYSA, MJ1097
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q58497 (0-433)
      • modified residue (68)
    Domains in SCOPe 2.06: d1tufb1, d1tufb2
  • Heterogens: AZ1, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1tufA (A:)
flgndtveikdgrffidgydaielaekfgtplyvmseeqikinynryieafkrweeetgk
efivayaykananlaitrllaklgcgadvvsggelyiaklsnvpskkivfngncktkeei
imgieanirafnvdsiselilinetakelgetanvafrinpnvnpkthpkistglkknkf
gldvesgiamkaikmalemeyvnvvgvhchigsqltdispfieetrkvmdfvvelkeegi
eiedvnlggglgipyykdkqiptqkdladaiintmlkykdkvempnlilepgrslvatag
yllgkvhhiketpvtkwvmidagmndmmrpamyeayhhiinckvknekevvsiagglces
sdvfgrdreldkvevgdvlaifdvgaygismannynargrprmvltskkgvflirerety
adliakdivpphll

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1tufB (B:)
flgndtveikdgrffidgydaielaekfgtplyvmseeqikinynryieafkrweeetgk
efivayaykananlaitrllaklgcgadvvsggelyiaklsnvpskkivfngncktkeei
imgieanirafnvdsiselilinetakelgetanvafrinpnvnpkthpkistglkknkf
gldvesgiamkaikmalemeyvnvvgvhchigsqltdispfieetrkvmdfvvelkeegi
eiedvnlggglgipyykdkqiptqkdladaiintmlkykdkvempnlilepgrslvatag
yllgkvhhiketpvtkwvmidagmndmmrpamyeayhhiinckvknekevvsiagglces
sdvfgrdreldkvevgdvlaifdvgaygismannynargrprmvltskkgvflirerety
adliakdivpphll