PDB entry 1tu4

View 1tu4 on RCSB PDB site
Description: Crystal Structure of Rab5-GDP Complex
Class: protein transport
Keywords: rab5, gtpase
Deposited on 2004-06-24, released 2004-10-05
The last revision prior to the SCOP 1.75 freeze date was dated 2004-10-05, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.217
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ras-related protein Rab-5A
    Species: HOMO SAPIENS
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20339 (1-End)
      • modified residue (74)
      • modified residue (146)
      • modified residue (154)
      • modified residue (161)
    Domains in SCOP 1.75: d1tu4a_
  • Chain 'B':
    Compound: Ras-related protein Rab-5A
    Species: HOMO SAPIENS
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20339
      • modified residue (74)
      • modified residue (146)
      • modified residue (154)
      • modified residue (161)
    Domains in SCOP 1.75: d1tu4b_
  • Chain 'C':
    Compound: Ras-related protein Rab-5A
    Species: HOMO SAPIENS
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20339 (1-End)
      • modified residue (74)
      • modified residue (146)
      • modified residue (154)
      • modified residue (161)
    Domains in SCOP 1.75: d1tu4c_
  • Chain 'D':
    Compound: Ras-related protein Rab-5A
    Species: HOMO SAPIENS
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20339
      • modified residue (74)
      • modified residue (146)
      • modified residue (154)
      • modified residue (161)
    Domains in SCOP 1.75: d1tu4d_
  • Heterogens: CO, SO4, GDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1tu4A (A:)
mgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu4A (A:)
gnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfeiw
dtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgnk
adlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1tu4B (B:)
mgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu4B (B:)
icqfklvllgesavgksslvlrfvkgqfqestigaafltqtvclddttvkfeiwdtagqe
ryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgnkadlank
ravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1tu4C (C:)
mgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu4C (C:)
gnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfeiw
dtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgnk
adlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1tu4D (D:)
mgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu4D (D:)
nkicqfklvllgesavgksslvlrfvkgqfhestigaafltqtvclddttvkfeiwdtag
qeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgnkadla
nkravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklp